Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00580
         (762 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006696-3|AAF39984.1|  391|Caenorhabditis elegans Hypothetical ...    99   4e-21
AL117205-8|CAB55167.1|  444|Caenorhabditis elegans Hypothetical ...    34   0.096
AF216968-1|AAF60253.2|  658|Caenorhabditis elegans semaphorin-2a...    31   1.2  
AC025726-1|AAK73921.1|  658|Caenorhabditis elegans Male abnormal...    31   1.2  
U67864-1|AAC47313.1|  415|Caenorhabditis elegans MEX-3 protein.        30   1.6  
AF003139-9|AAK73872.1|  415|Caenorhabditis elegans Muscle excess...    30   1.6  
AF003139-8|AAK73873.2|  443|Caenorhabditis elegans Muscle excess...    30   1.6  
Z92773-1|CAB07131.1|  395|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AF040647-4|AAY55829.1|  152|Caenorhabditis elegans Hypothetical ...    29   2.7  
AF040647-11|AAB94992.4|  270|Caenorhabditis elegans Hypothetical...    29   4.8  
Z81485-2|CAB03974.2|  708|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z81086-5|CAB03119.2|  182|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z50044-6|CAA90358.1|  223|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    28   6.3  
U50301-3|AAM29676.1|  370|Caenorhabditis elegans Hypothetical pr...    28   8.3  
AF016419-8|AAG24053.1|  293|Caenorhabditis elegans Serpentine re...    28   8.3  

>AC006696-3|AAF39984.1|  391|Caenorhabditis elegans Hypothetical
           protein W08E12.7 protein.
          Length = 391

 Score = 98.7 bits (235), Expect = 4e-21
 Identities = 43/91 (47%), Positives = 65/91 (71%)
 Frame = +2

Query: 8   SEKEVEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEETNKV 187
           S    + T+A D VVTKY++A +I N VL++V+A     A A ++C+ GDKL+LE+T K+
Sbjct: 15  SHTHEDYTLANDAVVTKYQVAAEITNAVLKEVLANIKEGAIAGDLCDLGDKLILEKTGKL 74

Query: 188 FKKEKDSKKGIAFSTCVSVNNCIVTFRPLRA 280
           +KKEK+  KGIA  TC+S++NCI  + PL++
Sbjct: 75  YKKEKNFTKGIAMPTCISIDNCICHYTPLKS 105



 Score = 88.6 bits (210), Expect = 4e-18
 Identities = 41/75 (54%), Positives = 54/75 (72%)
 Frame = +3

Query: 510 AEYGCKPIEGMLSHQLKQFRIDGEKSIIQNPSEAQRKEHEKATLEKYEVYAMDVLISTGE 689
           AE+G  PIE MLSHQL++  IDGEK IIQN  E Q+ E EK  ++K+E YA+D+L STG+
Sbjct: 186 AEFGLTPIENMLSHQLERNEIDGEKKIIQNSGEKQKGEIEKIKIDKHEAYAIDILFSTGK 245

Query: 690 AVGREMDTRCTYTKK 734
              ++MDTR T  +K
Sbjct: 246 GQPKDMDTRTTVFRK 260



 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 40/122 (32%), Positives = 66/122 (54%), Gaps = 4/122 (3%)
 Frame = +1

Query: 256 CHFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTVVVG---ESEVSGRAADVXXXX 426
           CH++P+ SE   +LK G + K+DLG HIDG IA  AHTVVVG   +++V+G+ AD+    
Sbjct: 98  CHYTPLKSEAPVVLKNGQVVKVDLGTHIDGLIATAAHTVVVGASKDNKVTGKLADLLRGT 157

Query: 427 XXXXXXXXXXXKPGTENYAVTEAIQKIMLNMVVSQL-RVCSHTN*SSSVLMERRVLYKIH 603
                      +P TEN  +T+ I K      ++ +  + SH    + +  E++++    
Sbjct: 158 HDALEIAIRSLRPDTENTTITKNIDKTAAEFGLTPIENMLSHQLERNEIDGEKKIIQNSG 217

Query: 604 QK 609
           +K
Sbjct: 218 EK 219


>AL117205-8|CAB55167.1|  444|Caenorhabditis elegans Hypothetical
           protein Y116A8A.9 protein.
          Length = 444

 Score = 34.3 bits (75), Expect = 0.096
 Identities = 24/89 (26%), Positives = 45/89 (50%)
 Frame = +2

Query: 5   TSEKEVEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEETNK 184
           ++E++    I+ + V   Y+ + +   +V + V +   P  +  EICE      LE T++
Sbjct: 115 SNEEKKALDISYEEVWQDYRRSAEAHRQVRKYVKSWIKPGMTMIEICER-----LETTSR 169

Query: 185 VFKKEKDSKKGIAFSTCVSVNNCIVTFRP 271
              KE+  + G+AF T  S+N+C   + P
Sbjct: 170 RLIKEQGLEAGLAFPTGCSLNHCAAHYTP 198



 Score = 34.3 bits (75), Expect = 0.096
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +1

Query: 241 CEQLHC--HFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTV 372
           C   HC  H++P A +   +L+ GD+ KID G H+ G +   A TV
Sbjct: 187 CSLNHCAAHYTPNAGDTT-VLQYGDVCKIDYGIHVRGRLIDSAFTV 231



 Score = 33.1 bits (72), Expect = 0.22
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = +3

Query: 516 YGCKPIEGMLSHQLKQFRIDGEKSIIQNPSEAQRKEHEKATLEKYEVYAMDVLISTGEA- 692
           Y  KPI  +  H + Q+RI   K++   P     K  E+  +E+ E+YA++   STG+  
Sbjct: 284 YVVKPIRNLNGHSIAQYRIHAGKTV---PIV---KGGEQTKMEENEIYAIETFGSTGKGY 337

Query: 693 VGREMDT 713
           V  +M+T
Sbjct: 338 VHDDMET 344


>AF216968-1|AAF60253.2|  658|Caenorhabditis elegans semaphorin-2a
           protein.
          Length = 658

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +1

Query: 244 EQLHCHFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTVVVGESEVSGRAADV 414
           +QLH     I S+  ++ +   +   D+G H+  F   +AH    GE  V  R A V
Sbjct: 195 KQLHASIRTIYSDNKWLNEPQFVGSFDVGQHVFFFFREIAHDNSFGERIVHSRVARV 251


>AC025726-1|AAK73921.1|  658|Caenorhabditis elegans Male abnormal
           protein 20, isoform a protein.
          Length = 658

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +1

Query: 244 EQLHCHFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTVVVGESEVSGRAADV 414
           +QLH     I S+  ++ +   +   D+G H+  F   +AH    GE  V  R A V
Sbjct: 195 KQLHASIRTIYSDNKWLNEPQFVGSFDVGQHVFFFFREIAHDNSFGERIVHSRVARV 251


>U67864-1|AAC47313.1|  415|Caenorhabditis elegans MEX-3 protein.
          Length = 415

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -1

Query: 201 FSFLKTLLVSSNTSLSPNSHISLADASGTHFAMTCSRTRFTICPAN 64
           F  L T+    N +LSP S   LA AS +  + TC     T+ P N
Sbjct: 372 FGLLSTIWSGGNMNLSPGS---LASASASPTSSTCDHNDHTLVPIN 414


>AF003139-9|AAK73872.1|  415|Caenorhabditis elegans Muscle excess
           protein 3, isoform a protein.
          Length = 415

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -1

Query: 201 FSFLKTLLVSSNTSLSPNSHISLADASGTHFAMTCSRTRFTICPAN 64
           F  L T+    N +LSP S   LA AS +  + TC     T+ P N
Sbjct: 372 FGLLSTIWSGGNMNLSPGS---LASASASPTSSTCDHNDHTLVPIN 414


>AF003139-8|AAK73873.2|  443|Caenorhabditis elegans Muscle excess
           protein 3, isoform b protein.
          Length = 443

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -1

Query: 201 FSFLKTLLVSSNTSLSPNSHISLADASGTHFAMTCSRTRFTICPAN 64
           F  L T+    N +LSP S   LA AS +  + TC     T+ P N
Sbjct: 400 FGLLSTIWSGGNMNLSPGS---LASASASPTSSTCDHNDHTLVPIN 442


>Z92773-1|CAB07131.1|  395|Caenorhabditis elegans Hypothetical
           protein W08E3.3 protein.
          Length = 395

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 167 LEETNKVFKKEKDSKKGIAFSTCVSVNNCIVTFRPLR 277
           L++  K+F +  D  K I + T V V  C+   +P+R
Sbjct: 163 LDKVEKLFTRANDKTKKIEYDTLVRVKKCLEEKKPVR 199


>AF040647-4|AAY55829.1|  152|Caenorhabditis elegans Hypothetical
           protein F54D12.10 protein.
          Length = 152

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -3

Query: 742 LISFLVYVHLVSISRPT-ASPVDIRTSIAYTSYFSSVAFSCSLRCASDGFCIILFSPSIR 566
           LI FL  + ++S+      SPV+  TS    ++ +    SC  RC     CI++ S S+ 
Sbjct: 7   LILFLFPITILSVFVSVRGSPVN-STSYVSKTFLNLTWKSCITRCVIVADCILVHSNSLN 65

Query: 565 NCF 557
            C+
Sbjct: 66  RCY 68


>AF040647-11|AAB94992.4|  270|Caenorhabditis elegans Hypothetical
           protein F54D12.1 protein.
          Length = 270

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -3

Query: 742 LISFLVYVHLVSISRPTASPVDIRTSIAYTSYFSSVAFS-CSLRCASDGFCIILFSPSIR 566
           L+  + YV + SI        +I TS + T   +S+ +  C  +C S   CI+ +S S+ 
Sbjct: 3   LLFLICYVLVNSIMVSVRGAPEISTSYS-TEIINSLTWDECVKQCLSTEICIMAYSNSLN 61

Query: 565 NCF 557
            C+
Sbjct: 62  ICY 64


>Z81485-2|CAB03974.2|  708|Caenorhabditis elegans Hypothetical
           protein C49F5.2 protein.
          Length = 708

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 652 SYFSSVAFSCSLRCASDGFC 593
           +Y+++V F+CS +CA  G C
Sbjct: 423 TYYNTVGFACSPKCACKGAC 442


>Z81086-5|CAB03119.2|  182|Caenorhabditis elegans Hypothetical
           protein F53B6.5 protein.
          Length = 182

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 19/55 (34%), Positives = 30/55 (54%)
 Frame = +3

Query: 525 KPIEGMLSHQLKQFRIDGEKSIIQNPSEAQRKEHEKATLEKYEVYAMDVLISTGE 689
           KPI  +    + Q RI  EK++   P     K  E+A +E+ E+YA++   STG+
Sbjct: 38  KPIGSLNGQSIAQCRIHTEKTV---PIV---KGGEQARMEENEIYAIETFGSTGK 86


>Z50044-6|CAA90358.1|  223|Caenorhabditis elegans Hypothetical
           protein F22B5.6 protein.
          Length = 223

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -1

Query: 180 LVSSNTSLSPNSHISLADASGTHFAMTCSRTRFTICPANLYLVTTKSSAIVFSTSFS 10
           ++S N   S    I   +A+ THF +TC  T F     +L +V      I+F T F+
Sbjct: 57  IISWNMLNSSRGKIVNENATNTHFGLTCVTTAFLCILTSLIIVD-----ILFKTHFT 108


>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
           protein Y8A9A.2 protein.
          Length = 1360

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -1

Query: 465 RLQETKSRFTSMMSCQQNICSTSRDFTFTHNYCMSYNSYKSINVSTK 325
           RL  + S +T+  +C Q  C T +  T+T   C+  N    +  +TK
Sbjct: 709 RLLSSWSEWTTTGTCNQTACGTCQTLTYTRT-CLKTNGCFCMGSATK 754


>U50301-3|AAM29676.1|  370|Caenorhabditis elegans Hypothetical
           protein F20D6.8 protein.
          Length = 370

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = -1

Query: 300 FQNVIRFARNGRKVTMQLFTETHVENAMPFLES 202
           +  +  F  NGR+VT+++  E+ +EN+ PF +S
Sbjct: 212 YTKMTTFLLNGREVTLEILLESTLENS-PFRQS 243


>AF016419-8|AAG24053.1|  293|Caenorhabditis elegans Serpentine
           receptor, class x protein6 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/70 (25%), Positives = 31/70 (44%)
 Frame = -3

Query: 757 FQLVHLISFLVYVHLVSISRPTASPVDIRTSIAYTSYFSSVAFSCSLRCASDGFCIILFS 578
           FQ V +  F V V ++    P   P D         +FSSV F  +L C+S+    ++++
Sbjct: 208 FQFVFISIFYVAVWILFQILPYIVPAD------QPIWFSSVPFLVTLNCSSNSVIYLMYN 261

Query: 577 PSIRNCFSWC 548
             ++     C
Sbjct: 262 TELQKSLKSC 271


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,846,706
Number of Sequences: 27780
Number of extensions: 380976
Number of successful extensions: 1377
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1376
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)