Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00579
         (730 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    62   4e-12
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    50   2e-08
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    46   4e-07
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    44   1e-06
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   5.8  

>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 62.1 bits (144), Expect = 4e-12
 Identities = 27/51 (52%), Positives = 40/51 (78%)
 Frame = +1

Query: 508 LSSTSSDKVNATIRGNSFFGVRHGLETLSQLIVYDDIRNNLLIVRDVTIKD 660
           ++ T+  ++NATI  ++ FG RHGLETL+QLI+YDD+R+ LL+  DV+I D
Sbjct: 154 VAETADGRLNATIIADNVFGGRHGLETLNQLIIYDDLRDQLLMPNDVSITD 204



 Score = 55.6 bits (128), Expect = 4e-10
 Identities = 20/43 (46%), Positives = 27/43 (62%)
 Frame = +3

Query: 126 WRWTCENNRCTKIRNEPENKEPVLSLEACKMFCDDYGLLWPKP 254
           WRW C++N C K    P+ +   LSL AC++FC +   LWPKP
Sbjct: 25  WRWECKSNYCQKAPITPDTEATGLSLPACRLFCSEAAALWPKP 67



 Score = 44.8 bits (101), Expect = 7e-07
 Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
 Frame = +2

Query: 254 TIETNLGNFLSKINMNTIDIQ-ITKQGKSDDLLTAAADRFKTLVSSSVPKGFSAKAAGKS 430
           T E ++G  L K+N+N+I+   +T +  +  ++  A  RF+  + + VP+       GK+
Sbjct: 68  TGEVHVGTTLVKVNINSINTGGLTFETAAHKIMAGATKRFRNQIEALVPRKLRLADGGKT 127

Query: 431 VTVYLVNDNPYIREFSLDMDESYEL 505
           + +     +P ++E +LD  ESY L
Sbjct: 128 LEINYKLIDPDLKELNLDTKESYAL 152



 Score = 32.3 bits (70), Expect = 0.004
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +3

Query: 660 QAVYPYRGILLDTARNFYSID 722
           +  Y YRGI LDT+RNF ++D
Sbjct: 205 EPAYQYRGIALDTSRNFVTVD 225


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 50.0 bits (114), Expect = 2e-08
 Identities = 23/51 (45%), Positives = 33/51 (64%)
 Frame = +1

Query: 508 LSSTSSDKVNATIRGNSFFGVRHGLETLSQLIVYDDIRNNLLIVRDVTIKD 660
           L+   SD +   +   +FFG RHGLETL+QLI +D++ N L I+  V I+D
Sbjct: 162 LTVLKSDSLAVRLSAANFFGARHGLETLNQLIWFDEVVNELRILHGVEIRD 212



 Score = 37.1 bits (82), Expect = 1e-04
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +3

Query: 126 WRWTCENNRCTKIRNEPENKEPVLSLEACKMFCDDYGLLWPKP 254
           + W CEN +C K   E E      SL  C M C +   +WPKP
Sbjct: 44  YTWKCENQKCVKYLVEDEE----TSLATCNMLCSE-PAIWPKP 81



 Score = 35.5 bits (78), Expect = 4e-04
 Identities = 11/18 (61%), Positives = 17/18 (94%)
 Frame = +3

Query: 669 YPYRGILLDTARNFYSID 722
           +PYRG+++DTARNF+ +D
Sbjct: 216 FPYRGVMIDTARNFFPVD 233


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 45.6 bits (103), Expect = 4e-07
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +3

Query: 96  IPTAAEEHSLWRWTCENNR--CTKIRNE-PENKEPVLSLEACKMFCDDYGLLWPKPRS 260
           + +   +  +W W C  +   CT+I +    N +   +LE C++ C  YG LWP+P S
Sbjct: 20  VSSRKSDSGIWYWQCNTDEETCTRISSTVSRNTDTYPTLETCRLVCGKYGALWPQPTS 77



 Score = 36.7 bits (81), Expect = 2e-04
 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
 Frame = +1

Query: 514 STSSDKVNATIRGNSFFGVRHGLETLSQLI-VY--DDIRNNLLIVRDVTIKD 660
           +T+ +++   I   + FG RHGLETLSQL+ VY  +D    L++  + +I D
Sbjct: 160 TTTGNQIGVQISAPTIFGARHGLETLSQLMDVYPNNDGTKCLVVTDEASISD 211



 Score = 31.5 bits (68), Expect = 0.007
 Identities = 11/17 (64%), Positives = 16/17 (94%)
 Frame = +3

Query: 669 YPYRGILLDTARNFYSI 719
           +P+RG+LLDTARNF ++
Sbjct: 215 FPHRGLLLDTARNFLTV 231


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 44.4 bits (100), Expect = 1e-06
 Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
 Frame = +1

Query: 529 KVNATIRGNSFFGVRHGLETLSQLIVYDD--IRNNLLIVRDVTIKD 660
           ++ A I   +FFG RHGLETLSQLI +DD   +  L +++  T++D
Sbjct: 189 EIVANITAKTFFGARHGLETLSQLIWWDDYETKGALKVLKGATVQD 234



 Score = 41.5 bits (93), Expect = 7e-06
 Identities = 29/86 (33%), Positives = 36/86 (41%)
 Frame = +3

Query: 126 WRWTCENNRCTKIRNEPENKEPVLSLEACKMFCDDYGLLWPKPRSRQIWVTSSPRLI*TP 305
           W W C N RC   R   +   PV+SL  C M C     LWP+P      VT + R +   
Sbjct: 56  WTWQCINQRCE--RRHIKGAIPVVSLSTCSMLCGS-TQLWPQPTGP---VTLASRAV--- 106

Query: 306 STFRSPSKERATTSSQRLPTGLRHWF 383
            TF     E  T + +   T L H F
Sbjct: 107 -TFNHQQLELETDTPEPARTLLEHSF 131



 Score = 35.5 bits (78), Expect = 4e-04
 Identities = 12/19 (63%), Positives = 18/19 (94%)
 Frame = +3

Query: 666 VYPYRGILLDTARNFYSID 722
           ++PYRGI+LDTARN+ S++
Sbjct: 237 IFPYRGIMLDTARNYMSVE 255



 Score = 25.0 bits (52), Expect = 0.63
 Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
 Frame = +3

Query: 180 NKEPVLSLEAC---KMFCDDYGL---LWPKPRSRQIWVTSSPRLI*TPSTFRSPSKERAT 341
           NK+ +L  EAC   + F D+  L   LWP+  +    V S P+L  T  T +     R  
Sbjct: 543 NKKQILGGEACLWSEQF-DETSLDTRLWPRAAAFAERVWSDPQLDVTSFTIQEDVYTRLN 601

Query: 342 TSSQRLPT---GLRHWFPVPC 395
           T   RL     G    +PV C
Sbjct: 602 THRDRLVARGLGAEAMWPVWC 622


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
 Frame = +1

Query: 103  RQPKSTHCGD---GRAKTIDARRSGTSR 177
            RQP  TH G      A    + RSGT R
Sbjct: 920  RQPAETHAGSPCRNSASPASSDRSGTPR 947


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,933
Number of Sequences: 336
Number of extensions: 3693
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)