Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00579
(730 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0121 - 833885-833949,834180-834430,834545-834604,834893-83... 31 0.71
03_02_0187 - 6248226-6249226,6249296-6250148 31 0.71
01_03_0010 - 11608537-11608786,11608816-11608940,11609152-116092... 31 0.71
07_01_0795 - 6257985-6258149,6258276-6258380,6259196-6259328,626... 30 1.6
12_02_0291 + 16951154-16952740 29 5.0
11_02_0045 - 7705728-7707581 28 6.6
07_03_1000 - 23220878-23221821,23222164-23223001 28 6.6
01_01_1060 - 8363272-8365912,8366375-8366443,8366479-8366843,836... 28 6.6
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 28 8.7
>05_01_0121 -
833885-833949,834180-834430,834545-834604,834893-834926,
835746-835805,836409-836509,836939-837039,837209-837289,
837580-837650,837738-837849,838138-838173,838865-838951,
839055-839396
Length = 466
Score = 31.5 bits (68), Expect = 0.71
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +1
Query: 538 ATIRGNSFFGVRHGLETLSQLIVYD-DIRN 624
ATI N+ +G GLET SQL V++ D +N
Sbjct: 140 ATIEANTIYGAIRGLETFSQLCVFNYDTKN 169
>03_02_0187 - 6248226-6249226,6249296-6250148
Length = 617
Score = 31.5 bits (68), Expect = 0.71
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +3
Query: 669 YPYRGILLDTARNFYSI 719
+ +RGILLDTARNFY +
Sbjct: 192 FTHRGILLDTARNFYPV 208
>01_03_0010 -
11608537-11608786,11608816-11608940,11609152-11609217,
11609741-11609872,11610507-11610608,11610743-11610940,
11611015-11611161,11611321-11611431,11613241-11613780,
11613847-11614003,11614148-11614297,11614375-11614514,
11615346-11615468,11615561-11615677,11617184-11617357,
11617768-11617909,11618076-11618194,11619773-11619955
Length = 991
Score = 31.5 bits (68), Expect = 0.71
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +1
Query: 184 RSLSSVWKPARCS-VTIMVSSGRNHDRDKSG*LPLQD*YEHHRHSDHQARKERRPPHSGC 360
+ LSS+ PA C + +++ +H +G L L +H HSDH + + P
Sbjct: 482 QKLSSLKAPASCQDIPLLLPHEPDHQASNNGELGLNGLDNNHGHSDHPNKTHWKQPIPNR 541
Query: 361 RQV*DTGFQ 387
+ DT Q
Sbjct: 542 KAKQDTSLQ 550
>07_01_0795 -
6257985-6258149,6258276-6258380,6259196-6259328,
6260225-6260289,6260569-6261642,6262328-6262433,
6262872-6263044,6263352-6263765
Length = 744
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 619 RNNLLIVRDVTIKDRLSILIEVFCW 693
RN L++R++TI L + VFCW
Sbjct: 131 RNFPLLIREITISGNLQHAVHVFCW 155
>12_02_0291 + 16951154-16952740
Length = 528
Score = 28.7 bits (61), Expect = 5.0
Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 4/121 (3%)
Frame = +3
Query: 138 CENNRCTKIRNEPENKEPVLSLEACKMFCDDYGLLWPKPRSRQ--IWVTSSPRLI*TPST 311
C N R I EN+E V S + +M + L PK + I VT P P
Sbjct: 92 CNNGRDDPIVTLDENQEVVDSFDGARM----WWRLCPKASKNKGAITVTYYPGEADKPRC 147
Query: 312 FR--SPSKERATTSSQRLPTGLRHWFPVPCLKASRRRLQENQSQFI*SMTILISENSPWT 485
F+ + R + LP+ +R W + + RR + ++ S+ + N P T
Sbjct: 148 FKLVFHKRHRQLVLNSYLPSVVRRWRELTAMNRQRRLFTNHANEAKKSVWTSVPYNPPAT 207
Query: 486 W 488
+
Sbjct: 208 F 208
>11_02_0045 - 7705728-7707581
Length = 617
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +3
Query: 57 ICIYSVFIIIECGIPTAAEEHSLWRWTCENNRCTKIRNEPENKEPVLSLEACKMFCDD 230
+C +++ ++ GIP E + L RWT N + + P N + L+ C C D
Sbjct: 524 LCRHALRVLTAIGIPVLPENYILKRWT-RNAKNNILSQVPANTKGSLAWR-CNDLCRD 579
>07_03_1000 - 23220878-23221821,23222164-23223001
Length = 593
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 538 ATIRGNSFFGVRHGLETLSQLIVYDDIRNNLLIVRDVTIKDR 663
AT+ + +G GLET SQL + +L+ V ++DR
Sbjct: 143 ATVTAATAWGAMRGLETFSQLAWWCGRERAVLVAAGVRVEDR 184
Score = 28.3 bits (60), Expect = 6.6
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = +3
Query: 666 VYPYRGILLDTARNFYSI 719
+YP+RG++LDT R ++ +
Sbjct: 186 LYPHRGLMLDTGRTYFPV 203
>01_01_1060 -
8363272-8365912,8366375-8366443,8366479-8366843,
8367403-8367550,8367630-8367873,8368105-8368407,
8368639-8368851,8368927-8369002,8369533-8369561,
8369610-8369984,8371784-8371927,8374053-8374086
Length = 1546
Score = 28.3 bits (60), Expect = 6.6
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = +2
Query: 302 TIDIQITKQGKSDDLLTAAADRFKTLVSSSVPKGFSAKAAGKSVTVYLVNDNPYIREF 475
T D +T GKS + AAAD +T++ SS+P + TVY NP R +
Sbjct: 722 TNDTWLTDSGKSS--IMAAADELETMLPSSIP--YMTARVFTMDTVYNFTVNPRDRHW 775
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 306 STFRSPSKERATTSSQRLPTGLRHWFPVPCLKASRRR 416
S RSP+++R + +R P R P P ++ RRR
Sbjct: 224 SRSRSPARDRGSPPRRRSPPARRERSPAPRSRSPRRR 260
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,478,350
Number of Sequences: 37544
Number of extensions: 451642
Number of successful extensions: 1261
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1260
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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