Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00579
(730 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54863| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11) 30 1.7
SB_15464| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_32355| Best HMM Match : Laminin_EGF (HMM E-Value=0) 29 5.1
SB_51871| Best HMM Match : Gag_p12 (HMM E-Value=5.8) 28 6.7
SB_49808| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_43840| Best HMM Match : NDK (HMM E-Value=0) 28 6.7
SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09) 28 6.7
SB_33690| Best HMM Match : Fer4 (HMM E-Value=2.1) 28 8.9
>SB_54863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1251
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 57 ICIYSVFIIIECGIPTAAEEHSLWRWTCENNRCTKIRNEPENK 185
IC + ++ C I ++ + H+L+RW N R T I N +K
Sbjct: 12 ICTILLLFLLAC-IKSSCDAHALYRWDSHNER-TNIENSDASK 52
>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
Length = 1903
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +2
Query: 254 TIETNLGNFLSK-INMNTIDIQITKQGKSDDLLTAAADRFKTLVSSSVPKG 403
T+E N N L++ + ++ +D+QI K+ S + + + K L S VPKG
Sbjct: 1214 TLELNNMNTLTEYVILSVVDLQINKESSSSYVESWDGHKVKLLCSVRVPKG 1264
>SB_15464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1042
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 281 LSKINMNTIDIQITKQGKSDDLLTAAADRFKTLVSSSVPKG 403
++ N N +DI I K+ + A DR++ L+++S P G
Sbjct: 503 MNNFNQNALDIAIKKEKTEVAMAMAENDRWRELMNTSSPGG 543
>SB_32355| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 1358
Score = 28.7 bits (61), Expect = 5.1
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Frame = +2
Query: 197 QSGSLQDVL*RLWSPLAETTIETNLGNFLSKINMN-TIDIQITKQGKSDDLLTAAADRFK 373
QS + Q+V + SP TT + L + N ++ +++ GK +TAA D F+
Sbjct: 978 QSATRQEVTGSVTSPEGTTTQQVTLPPCNQTCHQNLSVFGEMSLTGKVTVNVTAANDDFR 1037
Query: 374 TLVSSSVPKGF-SAKAAGKSVTVYLVN 451
+ +S VP+ F A A G ++ N
Sbjct: 1038 GVRASVVPREFYEASALGDRRDAFIGN 1064
>SB_51871| Best HMM Match : Gag_p12 (HMM E-Value=5.8)
Length = 458
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 563 KKEFPRMVAFTLSLDVDESRARSSHPCPGRILGYKD 456
+KE R A S + SR RS PC R + +KD
Sbjct: 236 RKEKERREAIARSYEPCTSRLRSGRPCSSRAVTFKD 271
>SB_49808| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 104
Score = 28.3 bits (60), Expect = 6.7
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Frame = +2
Query: 197 QSGSLQDVL*RLWSPLAETTIETNLGNFLSKINMN-TIDIQITKQGKSDDLLTAAADRFK 373
QS +LQ V + SP TT + L + N ++ +++ GK +TAA D F+
Sbjct: 19 QSATLQVVTGSVTSPEGTTTQQVTLPPCNQTCHQNLSVFGEMSLTGKLTVNVTAANDDFR 78
Query: 374 TLVSSSVPKGF-SAKAAG 424
+ +S VP+ F A A G
Sbjct: 79 GVRASVVPREFYEASALG 96
>SB_43840| Best HMM Match : NDK (HMM E-Value=0)
Length = 786
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = -2
Query: 726 DDLWSRSSSRCPTKYLDKDRQPVLNCDVTDNQQIIPDVVVHD*LRERLQTVTDAEERVST 547
D LWS SS Y D D +P + + N + +P + + + + E+ VST
Sbjct: 470 DVLWSTWSSDSQDGYTDDDTEPPPSYEQAINTEALPGIEAEQAVSTEVVPDIEVEQAVST 529
>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
Length = 2059
Score = 28.3 bits (60), Expect = 6.7
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +1
Query: 100 RRQPKSTHCGDGRAKTIDARRSGTSRRIRSLSSVWKPARCSVTIMVSSGRNHDRDKSG*L 279
R Q + +G + +++ S TSR+I +V KPA+ S + R R KS L
Sbjct: 1504 REQTYDKNARNGFSSDVNSASSITSRKIDPYPTVPKPAKDSAVVSSVYKRTGARPKSRPL 1563
Query: 280 P 282
P
Sbjct: 1564 P 1564
>SB_33690| Best HMM Match : Fer4 (HMM E-Value=2.1)
Length = 488
Score = 27.9 bits (59), Expect = 8.9
Identities = 29/108 (26%), Positives = 38/108 (35%), Gaps = 6/108 (5%)
Frame = +3
Query: 90 CGIPTAAEEHSLWRWTCENNRCTKIRNEPENKEPVLSLEACKMFCDDYGLLWPKPRSRQI 269
C + E WT + R P+ +E +S + + Y W R
Sbjct: 212 CELDYPTTERCPANWTTQVQRDALPTGLPKYRE--MSCQLDYPTTERYPANWTTQVQRDA 269
Query: 270 WVTSSPRLI*TPSTFRSPSKERA----TTSSQR--LPTGLRHWFPVPC 395
T P P PS ER TT QR LPTGL + +PC
Sbjct: 270 LRTGLPNYRERPCQLDYPSTERCPANWTTQLQRDTLPTGLPRYREMPC 317
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,524,680
Number of Sequences: 59808
Number of extensions: 509759
Number of successful extensions: 1338
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1331
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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