Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00579
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024214-14|AAU87808.1|  644|Caenorhabditis elegans Hypothetical...    30   1.5  
AF039712-2|AAK21401.1|  401|Caenorhabditis elegans Hypothetical ...    28   5.9  
Z83234-5|CAB70171.2|  640|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>AC024214-14|AAU87808.1|  644|Caenorhabditis elegans Hypothetical
           protein Y77E11A.12b protein.
          Length = 644

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
 Frame = +3

Query: 309 TFRSPSKERATTSSQRLPTGLRHWFPVPCLKASRRRLQENQSQFI*S-----MTILISEN 473
           T RS   ++++ S  R    LR+  P P +     + +  +S  I S     +++L +EN
Sbjct: 88  TSRSAHFKKSSPSMVRGGPQLRNSSPRPLILQQHAKWRNEESSSISSTDSEDISLLPNEN 147

Query: 474 SPWTWMRATSSTFIN 518
             W W+R  + +F++
Sbjct: 148 QKWEWLRREAKSFVD 162


>AF039712-2|AAK21401.1|  401|Caenorhabditis elegans Hypothetical
           protein F54D7.3 protein.
          Length = 401

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 583 ETLSQLIVYDDIRNNLLIVRDVTIKDRLSILIE-VFCWTP 699
           E  S+L++  + +NNL   +  T+K    I++  +FCWTP
Sbjct: 229 EKSSELLLRRNGQNNLEKAKSRTLKMTFVIVLAFIFCWTP 268


>Z83234-5|CAB70171.2|  640|Caenorhabditis elegans Hypothetical
           protein K09E4.2 protein.
          Length = 640

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 549 WKLFLRRPSRSGDALSANRVRRHQE 623
           W L + RP+R GD++S   +RR ++
Sbjct: 410 WHLIVTRPARPGDSVSRETLRRLEQ 434


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,051,418
Number of Sequences: 27780
Number of extensions: 369367
Number of successful extensions: 1049
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)