Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00578
         (772 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)        31   0.78 
SB_26967| Best HMM Match : Pkinase (HMM E-Value=0)                     31   1.0  
SB_18909| Best HMM Match : RVT_1 (HMM E-Value=1.2e-28)                 30   2.4  
SB_28981| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_21963| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_45509| Best HMM Match : PX (HMM E-Value=0.063)                      28   7.3  
SB_51030| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  

>SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)
          Length = 3071

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +2

Query: 128  KHVIVVSRLQQREIDRTSESIRKEEKNKHK-IDGL 229
            K  +V ++ Q RE DRT  S++KE K+K   IDGL
Sbjct: 1125 KESLVTAQNQLRERDRTINSLKKEVKDKQSIIDGL 1159


>SB_26967| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 428

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +3

Query: 294 SLHVLSTVRRPHLRLSRGHTDRWSIGIRTEA 386
           SL    T + P+L+LS+G   +W +GIR+++
Sbjct: 253 SLPTTPTKKYPYLKLSQGKRPKWHLGIRSQS 283


>SB_18909| Best HMM Match : RVT_1 (HMM E-Value=1.2e-28)
          Length = 591

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = +3

Query: 549 YGDAASMTMNLTGFNKMLEELDLHKLIDGGQTTDSTAYFHVQTTKMKKLSAALTVQNWLH 728
           + D A +  +  G  K+L+ +D+HK     Q   +    H+Q    KK S    +   LH
Sbjct: 72  FPDIADLQFDTRGIAKLLKSVDVHKASGPDQIPCNNILLHIQHGFRKKYSCETQLITVLH 131


>SB_28981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 418 EEKRRLDSRNRYHQKLQKIRQKDRLKRDAK 507
           EEKRR +   R HQ+LQ I   ++  R+A+
Sbjct: 237 EEKRRREELERLHQELQNILLAEKEAREAE 266


>SB_21963| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 504

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = +3

Query: 270 QNVTSFGDSLHVLSTVRRPHLRLSRGHTDRWSIGIRTEARDHGPHVPRIRREKEAGFE 443
           +NVT F    HV+  +R    R    H    + GI+    DH PH P  ++   A  E
Sbjct: 346 ENVTGFDSQFHVIPPLRGQLDRAGLRHA-LVTDGIQAICSDHQPHDPAAKQAPFAATE 402


>SB_45509| Best HMM Match : PX (HMM E-Value=0.063)
          Length = 556

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = +2

Query: 131 HVIVVSRLQQREIDRTSESIRKEEKNKHKID 223
           HV+   + + R  DR S++ +KE+K+K+KI+
Sbjct: 368 HVLKFFQEKPRSRDRKSKNSKKEDKSKNKIE 398


>SB_51030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 420 REKEAGFEKPLPSEAPEDQTEGSLEEGREDV 512
           RE +   EK LPS   E   +G+ EE RE+V
Sbjct: 280 RELDKKIEKLLPSSKCEGNEKGNAEERREEV 310


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,579,924
Number of Sequences: 59808
Number of extensions: 449096
Number of successful extensions: 1478
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1476
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)