Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00578
(772 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY118691-1|AAM50551.1| 1230|Drosophila melanogaster AT16851p pro... 33 0.43
AE014297-3462|AAN13982.2| 1230|Drosophila melanogaster CG6129-PC... 33 0.43
AE014297-3461|AAF56238.3| 2048|Drosophila melanogaster CG6129-PB... 33 0.43
BT024207-1|ABC86269.1| 706|Drosophila melanogaster RE41071p pro... 31 2.3
AE014296-1473|AAF50401.3| 706|Drosophila melanogaster CG6817-PA... 31 2.3
AE013599-1353|AAF58611.2| 5303|Drosophila melanogaster CG13185-P... 31 2.3
AJ010073-1|CAB45234.1| 614|Drosophila melanogaster XRCC1 protei... 30 3.1
AF132142-1|AAD33589.1| 614|Drosophila melanogaster DNA repair p... 30 3.1
AE014298-727|AAF46025.1| 614|Drosophila melanogaster CG4208-PA ... 30 3.1
BT010055-1|AAQ22524.1| 954|Drosophila melanogaster LD16082p pro... 29 7.1
AF140746-1|AAF22575.1| 954|Drosophila melanogaster Ral guanine ... 29 7.1
AE014296-2321|AAF49790.2| 954|Drosophila melanogaster CG8865-PA... 29 7.1
AY058279-1|AAL13508.1| 1148|Drosophila melanogaster GH03118p pro... 29 9.3
AE013599-3458|AAF46895.4| 2964|Drosophila melanogaster CG30092-P... 29 9.3
>AY118691-1|AAM50551.1| 1230|Drosophila melanogaster AT16851p
protein.
Length = 1230
Score = 33.1 bits (72), Expect = 0.43
Identities = 26/79 (32%), Positives = 35/79 (44%)
Frame = +3
Query: 267 SQNVTSFGDSLHVLSTVRRPHLRLSRGHTDRWSIGIRTEARDHGPHVPRIRREKEAGFEK 446
S+ F DSL T R L S D++S G E RDH V +RE+ E+
Sbjct: 346 SKEGEGFIDSLRKELTDCRRQLADSNIERDKYS-GSNKELRDHVKRVESAKREQARAIEE 404
Query: 447 PLPSEAPEDQTEGSLEEGR 503
L + + T+ SLE R
Sbjct: 405 ALQKISNLEDTKNSLENER 423
>AE014297-3462|AAN13982.2| 1230|Drosophila melanogaster CG6129-PC,
isoform C protein.
Length = 1230
Score = 33.1 bits (72), Expect = 0.43
Identities = 26/79 (32%), Positives = 35/79 (44%)
Frame = +3
Query: 267 SQNVTSFGDSLHVLSTVRRPHLRLSRGHTDRWSIGIRTEARDHGPHVPRIRREKEAGFEK 446
S+ F DSL T R L S D++S G E RDH V +RE+ E+
Sbjct: 346 SKEGEGFIDSLRKELTDCRRQLADSNIERDKYS-GSNKELRDHVKRVESAKREQARAIEE 404
Query: 447 PLPSEAPEDQTEGSLEEGR 503
L + + T+ SLE R
Sbjct: 405 ALQKISNLEDTKNSLENER 423
>AE014297-3461|AAF56238.3| 2048|Drosophila melanogaster CG6129-PB,
isoform B protein.
Length = 2048
Score = 33.1 bits (72), Expect = 0.43
Identities = 26/79 (32%), Positives = 35/79 (44%)
Frame = +3
Query: 267 SQNVTSFGDSLHVLSTVRRPHLRLSRGHTDRWSIGIRTEARDHGPHVPRIRREKEAGFEK 446
S+ F DSL T R L S D++S G E RDH V +RE+ E+
Sbjct: 1164 SKEGEGFIDSLRKELTDCRRQLADSNIERDKYS-GSNKELRDHVKRVESAKREQARAIEE 1222
Query: 447 PLPSEAPEDQTEGSLEEGR 503
L + + T+ SLE R
Sbjct: 1223 ALQKISNLEDTKNSLENER 1241
>BT024207-1|ABC86269.1| 706|Drosophila melanogaster RE41071p
protein.
Length = 706
Score = 30.7 bits (66), Expect = 2.3
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +1
Query: 274 MSHHLVTVCMFCLLCAAHT-CGSHVD 348
M+ H++ VC+ CLLCA C H++
Sbjct: 1 MARHIMAVCVVCLLCAHRLHCQDHIE 26
>AE014296-1473|AAF50401.3| 706|Drosophila melanogaster CG6817-PA
protein.
Length = 706
Score = 30.7 bits (66), Expect = 2.3
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +1
Query: 274 MSHHLVTVCMFCLLCAAHT-CGSHVD 348
M+ H++ VC+ CLLCA C H++
Sbjct: 1 MARHIMAVCVVCLLCAHRLHCQDHIE 26
>AE013599-1353|AAF58611.2| 5303|Drosophila melanogaster CG13185-PA
protein.
Length = 5303
Score = 30.7 bits (66), Expect = 2.3
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 582 TGFNKMLEELDLHKLIDGGQTTDSTAYFHVQ 674
TG + LEE+ L +L+D G+TT + + +Q
Sbjct: 373 TGSKRKLEEVPLEELLDLGETTKKSGFLRIQ 403
>AJ010073-1|CAB45234.1| 614|Drosophila melanogaster XRCC1 protein
protein.
Length = 614
Score = 30.3 bits (65), Expect = 3.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 418 EEKRRLDSRNRYHQKLQKIRQKDRLKRDAKMSTLS 522
EEK +L R H K +K R+K++ K D + S S
Sbjct: 347 EEKEQLRKEERSHSKEEKSRRKEKSKHDHRSSDTS 381
>AF132142-1|AAD33589.1| 614|Drosophila melanogaster DNA repair
protein XRCC1 protein.
Length = 614
Score = 30.3 bits (65), Expect = 3.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 418 EEKRRLDSRNRYHQKLQKIRQKDRLKRDAKMSTLS 522
EEK +L R H K +K R+K++ K D + S S
Sbjct: 347 EEKEQLRKEERSHSKEEKSRRKEKSKHDHRSSDTS 381
>AE014298-727|AAF46025.1| 614|Drosophila melanogaster CG4208-PA
protein.
Length = 614
Score = 30.3 bits (65), Expect = 3.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 418 EEKRRLDSRNRYHQKLQKIRQKDRLKRDAKMSTLS 522
EEK +L R H K +K R+K++ K D + S S
Sbjct: 347 EEKEQLRKEERSHSKEEKSRRKEKSKHDHRSSDTS 381
>BT010055-1|AAQ22524.1| 954|Drosophila melanogaster LD16082p
protein.
Length = 954
Score = 29.1 bits (62), Expect = 7.1
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +1
Query: 313 LCAAHTCGSHVDIQTDGVLAYEPRLETTDHMSLELEEKRRLDSRN-RYHQKLQKIRQKDR 489
L +HTC + T A P L+ TD + + S++ YHQ+ Q+ +Q+
Sbjct: 23 LIKSHTCAYQLQDLTGYNRALMPPLDNTDFSNAWRQVNNNTTSQSCAYHQQRQQQQQQQD 82
Query: 490 LKRDAKMSTLSCT*PRYSACTGTPL 564
K D+K T PR + TP+
Sbjct: 83 AK-DSKRHYHHHTCPRQRKKSMTPV 106
>AF140746-1|AAF22575.1| 954|Drosophila melanogaster Ral guanine
nucleotide exchangefactor 2 protein.
Length = 954
Score = 29.1 bits (62), Expect = 7.1
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +1
Query: 313 LCAAHTCGSHVDIQTDGVLAYEPRLETTDHMSLELEEKRRLDSRN-RYHQKLQKIRQKDR 489
L +HTC + T A P L+ TD + + S++ YHQ+ Q+ +Q+
Sbjct: 23 LIKSHTCAYQLQDLTGYNRALMPPLDNTDFSNAWRQVNNNTTSQSCAYHQQRQQQQQQQD 82
Query: 490 LKRDAKMSTLSCT*PRYSACTGTPL 564
K D+K T PR + TP+
Sbjct: 83 AK-DSKRHYHHHTCPRQRKKSMTPV 106
>AE014296-2321|AAF49790.2| 954|Drosophila melanogaster CG8865-PA,
isoform A protein.
Length = 954
Score = 29.1 bits (62), Expect = 7.1
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +1
Query: 313 LCAAHTCGSHVDIQTDGVLAYEPRLETTDHMSLELEEKRRLDSRN-RYHQKLQKIRQKDR 489
L +HTC + T A P L+ TD + + S++ YHQ+ Q+ +Q+
Sbjct: 23 LIKSHTCAYQLQDLTGYNRALMPPLDNTDFSNAWRQVNNNTTSQSCAYHQQRQQQQQQQD 82
Query: 490 LKRDAKMSTLSCT*PRYSACTGTPL 564
K D+K T PR + TP+
Sbjct: 83 AK-DSKRHYHHHTCPRQRKKSMTPV 106
>AY058279-1|AAL13508.1| 1148|Drosophila melanogaster GH03118p
protein.
Length = 1148
Score = 28.7 bits (61), Expect = 9.3
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = +3
Query: 363 SIGIRTEARDHGPHVPRIRREKEAGFEKPLPSEAPEDQTEGSLEEGREDVDPEL 524
S G+R +AR G + R KEA F P AP Q E L+E E ++P++
Sbjct: 659 SSGVRNDARAAGHGLEVCHRNKEASFVVYCPI-APNVQIE-RLDEYGERIEPKI 710
>AE013599-3458|AAF46895.4| 2964|Drosophila melanogaster CG30092-PD,
isoform D protein.
Length = 2964
Score = 28.7 bits (61), Expect = 9.3
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = +3
Query: 363 SIGIRTEARDHGPHVPRIRREKEAGFEKPLPSEAPEDQTEGSLEEGREDVDPEL 524
S G+R +AR G + R KEA F P AP Q E L+E E ++P++
Sbjct: 2475 SSGVRNDARAAGHGLEVCHRNKEASFVVYCPI-APNVQIE-RLDEYGERIEPKI 2526
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,085,676
Number of Sequences: 53049
Number of extensions: 630575
Number of successful extensions: 2215
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2211
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3561257073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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