Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00578
(772 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g02990.2 68414.m00269 expressed protein similar to mature-par... 31 1.1
At1g02990.1 68414.m00270 expressed protein similar to mature-par... 31 1.1
At3g58050.1 68416.m06471 expressed protein 29 3.4
At1g34750.1 68414.m04321 protein phosphatase 2C, putative / PP2C... 29 4.5
At4g34730.1 68417.m04929 ribosome-binding factor A family protei... 28 5.9
At3g54970.2 68416.m06097 expressed protein 28 5.9
At3g54970.1 68416.m06096 expressed protein 28 5.9
At2g17480.1 68415.m02019 seven transmembrane MLO family protein ... 28 7.9
At1g78940.1 68414.m09203 protein kinase family protein contains ... 28 7.9
>At1g02990.2 68414.m00269 expressed protein similar to
mature-parasite-infected erythrocyte surface antigen
(GI:160409) {Plasmodium falciparum}
Length = 1238
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +2
Query: 128 KHVIVVSRLQQREIDRTSESIRKEEKNKHKIDG 226
KH+I S L + + T +S+R+E KNKH ++G
Sbjct: 529 KHLIKPSDLNE-DRHTTKQSVRREVKNKHSLEG 560
>At1g02990.1 68414.m00270 expressed protein similar to
mature-parasite-infected erythrocyte surface antigen
(GI:160409) {Plasmodium falciparum}
Length = 1069
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +2
Query: 128 KHVIVVSRLQQREIDRTSESIRKEEKNKHKIDG 226
KH+I S L + + T +S+R+E KNKH ++G
Sbjct: 529 KHLIKPSDLNE-DRHTTKQSVRREVKNKHSLEG 560
>At3g58050.1 68416.m06471 expressed protein
Length = 1209
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/79 (22%), Positives = 37/79 (46%)
Frame = +1
Query: 271 KMSHHLVTVCMFCLLCAAHTCGSHVDIQTDGVLAYEPRLETTDHMSLELEEKRRLDSRNR 450
+ + H + VC+ L H HV + ++ E +++ + E E+ + R
Sbjct: 496 RQNAHSIFVCLTLKLLEQHL---HVACKE--IITLEKQVKLLEEEEKEKREEEERKEKKR 550
Query: 451 YHQKLQKIRQKDRLKRDAK 507
++ +K+R+K+RLK K
Sbjct: 551 SKEREKKLRKKERLKEKDK 569
>At1g34750.1 68414.m04321 protein phosphatase 2C, putative / PP2C,
putative similar to GB:AAD17805 from (Lotus japonicus)
(Proc. Natl. Acad. Sci. U.S.A. 96 (4), 1738-1743 (1999))
Length = 282
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +3
Query: 390 DHGPHVPRIRREKEAGFEKPLPSEAPEDQTEGSLEEGREDVDPEL 524
DH PH R+ E + GF +P + P + G L R D L
Sbjct: 164 DHEPHTERLSIEGKGGFVSNMPGDVP--RVNGQLAVSRAFGDKSL 206
>At4g34730.1 68417.m04929 ribosome-binding factor A family protein
contains PFam PF02033: Ribosome-binding factor A
Length = 215
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +3
Query: 372 IRTEARDHGPHV----PRIRREKEAGFEKPLPSEAPEDQTEGSLEEGREDV 512
I EA + G V +I+ EK +G K PS++ ED + +++ ED+
Sbjct: 161 IEDEAMERGSRVIAILDKIKAEKGSGEGKTEPSDSTEDDQDWEVDDPDEDI 211
>At3g54970.2 68416.m06097 expressed protein
Length = 304
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +3
Query: 444 KPLPSEAPEDQTEGSLEEGREDVDPELYVAQIFGMYGDAASMTMNLTGFNKMLEELDL 617
+P+P + D+ GS+ E + V V + +YG+ ++T+ +TG + L LD+
Sbjct: 80 QPVPGSSIYDRVNGSMSEALKSV----VVKESERLYGEELAVTVLVTGNVEKLNRLDV 133
>At3g54970.1 68416.m06096 expressed protein
Length = 353
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +3
Query: 444 KPLPSEAPEDQTEGSLEEGREDVDPELYVAQIFGMYGDAASMTMNLTGFNKMLEELDL 617
+P+P + D+ GS+ E + V V + +YG+ ++T+ +TG + L LD+
Sbjct: 80 QPVPGSSIYDRVNGSMSEALKSV----VVKESERLYGEELAVTVLVTGNVEKLNRLDV 133
>At2g17480.1 68415.m02019 seven transmembrane MLO family protein /
MLO-like protein 8 (MLO8) identical to membrane protein
Mlo8 [Arabidopsis thaliana] gi|14091586|gb|AAK53801;
similar to MLO protein SWISS-PROT:P93766,
NCBI_gi:1877221 [Hordeum vulgare][Barley]
Length = 593
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +3
Query: 657 AYFHVQTTKMKKLSAALTVQNWLHGEHEVKAHDH 758
A FHV + + + L ++ W H E+E +H++
Sbjct: 188 AIFHVLYSFLTMMLGRLKIRGWKHWENETSSHNY 221
>At1g78940.1 68414.m09203 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 680
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +1
Query: 370 AYEPRLETTDHMSLELEEKRRLDSRNRYHQKLQKIRQKDRLKRDAKM 510
A R + T+ L EE+RRL+ + I +K+R K A +
Sbjct: 278 ALSARQQATELQKLRTEEERRLEEAKSSEEAAMSIVEKERAKAKAAL 324
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,485,787
Number of Sequences: 28952
Number of extensions: 299561
Number of successful extensions: 947
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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