Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00576
(620 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q15393 Cluster: Splicing factor 3B subunit 3; n=64; Euk... 155 8e-37
UniRef50_Q54SA7 Cluster: CPSF domain-containing protein; n=1; Di... 128 1e-28
UniRef50_Q2HWB0 Cluster: CPSF A subunit, C-terminal; WD40-like; ... 123 4e-27
UniRef50_A7RHF3 Cluster: Predicted protein; n=1; Nematostella ve... 121 1e-26
UniRef50_A4RYT7 Cluster: Predicted protein; n=3; Viridiplantae|R... 116 5e-25
UniRef50_Q8I574 Cluster: Splicing factor 3b, subunit 3, 130kD, p... 114 2e-24
UniRef50_A0ED07 Cluster: Chromosome undetermined scaffold_9, who... 108 9e-23
UniRef50_Q7RIV2 Cluster: Drosophila melanogaster CG13900 gene pr... 105 6e-22
UniRef50_Q5KP25 Cluster: Pre-mRNA-splicing factor RSE1; n=3; Dik... 103 3e-21
UniRef50_A7ATX1 Cluster: Splicing factor 3b, subunit 3, 130kD, p... 101 1e-20
UniRef50_Q9UTT2 Cluster: Pre-mRNA-splicing factor rse1; n=17; Di... 100 2e-20
UniRef50_Q2H7K6 Cluster: Putative uncharacterized protein; n=1; ... 98 1e-19
UniRef50_Q0V0M1 Cluster: Putative uncharacterized protein; n=1; ... 96 5e-19
UniRef50_Q4N305 Cluster: Putative uncharacterized protein; n=1; ... 88 1e-16
UniRef50_UPI0000498842 Cluster: splicing factor 3b subunit 3; n=... 86 6e-16
UniRef50_Q4UAB5 Cluster: Splicing factor 3b subunit, putative; n... 85 1e-15
UniRef50_Q5CHP5 Cluster: CG13900 gene product; n=2; Cryptosporid... 84 2e-15
UniRef50_UPI0000499BE9 Cluster: splicing factor 3B subunit 3; n=... 81 2e-14
UniRef50_Q5A7S5 Cluster: Pre-mRNA-splicing factor RSE1; n=1; Can... 74 3e-12
UniRef50_Q6BYK1 Cluster: Pre-mRNA-splicing factor RSE1; n=2; Sac... 69 9e-11
UniRef50_A5DFJ2 Cluster: Putative uncharacterized protein; n=1; ... 67 4e-10
UniRef50_Q4T683 Cluster: Chromosome undetermined SCAF8882, whole... 60 4e-08
UniRef50_Q04693 Cluster: Pre-mRNA-splicing factor RSE1; n=2; Sac... 57 3e-07
UniRef50_A7TN11 Cluster: Putative uncharacterized protein; n=1; ... 55 1e-06
UniRef50_Q753D4 Cluster: Pre-mRNA-splicing factor RSE1; n=1; Ere... 54 2e-06
UniRef50_A5DXW5 Cluster: Putative uncharacterized protein; n=1; ... 51 3e-05
UniRef50_A2DD61 Cluster: CPSF A subunit region family protein; n... 50 3e-05
UniRef50_Q6CAH5 Cluster: Pre-mRNA-splicing factor RSE1; n=1; Yar... 48 1e-04
UniRef50_Q6CXH8 Cluster: Pre-mRNA-splicing factor RSE1; n=1; Klu... 47 4e-04
UniRef50_Q6FLQ6 Cluster: Pre-mRNA-splicing factor RSE1; n=1; Can... 47 4e-04
UniRef50_Q0D7W9 Cluster: Os07g0203700 protein; n=5; Oryza sativa... 44 0.002
UniRef50_Q3LWA3 Cluster: Splicing factor 3b; n=1; Bigelowiella n... 43 0.007
UniRef50_Q55BV8 Cluster: Putative uncharacterized protein; n=1; ... 37 0.34
UniRef50_Q5EFC9 Cluster: Sf3b complex subunit 3; n=3; Trypanosom... 36 0.59
UniRef50_UPI000155590D Cluster: PREDICTED: similar to cell surfa... 36 1.0
UniRef50_A2EED7 Cluster: Putative uncharacterized protein; n=1; ... 34 2.4
UniRef50_A0E766 Cluster: Chromosome undetermined scaffold_80, wh... 34 2.4
UniRef50_UPI0000EBEC9A Cluster: PREDICTED: similar to KIAA1210 p... 34 3.1
UniRef50_UPI0000F34693 Cluster: Uncharacterized protein KIAA1210... 34 3.1
UniRef50_Q0HKR3 Cluster: Flagellar hook-associated 2 domain prot... 33 5.5
UniRef50_Q57XR8 Cluster: Putative uncharacterized protein; n=1; ... 33 5.5
>UniRef50_Q15393 Cluster: Splicing factor 3B subunit 3; n=64;
Eukaryota|Rep: Splicing factor 3B subunit 3 - Homo
sapiens (Human)
Length = 1217
Score = 155 bits (376), Expect = 8e-37
Identities = 65/94 (69%), Positives = 80/94 (85%)
Frame = +1
Query: 244 STTIATISGSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVID 423
S T+SG +G+L+PFTS EDHDFFQH+EMH+RSE+ PLCGRDHLSFRSYY+PVKNVID
Sbjct: 1116 SLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVID 1175
Query: 424 GDLCEQFNSLDPGKQKAIAGDLERTPAEDQKNLK 525
GDLCEQFNS++P KQK ++ +L+RTP E K L+
Sbjct: 1176 GDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLE 1209
Score = 137 bits (331), Expect = 2e-31
Identities = 58/80 (72%), Positives = 73/80 (91%)
Frame = +2
Query: 8 SILDYDTIAVSDKFGNVAIMRLPQSVSDDVDEDPTGNKALWDRGLLNGASQKGDVVVNFH 187
S+LDYDT+A +DKFGN+ ++RLP + +D+VDEDPTGNKALWDRGLLNGASQK +V++N+H
Sbjct: 1037 SLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYH 1096
Query: 188 VGETVTSLQRATLIPGGSEA 247
VGETV SLQ+ TLIPGGSE+
Sbjct: 1097 VGETVLSLQKTTLIPGGSES 1116
>UniRef50_Q54SA7 Cluster: CPSF domain-containing protein; n=1;
Dictyostelium discoideum AX4|Rep: CPSF domain-containing
protein - Dictyostelium discoideum AX4
Length = 1256
Score = 128 bits (309), Expect = 1e-28
Identities = 57/89 (64%), Positives = 75/89 (84%)
Frame = +1
Query: 259 TISGSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVIDGDLCE 438
TISG++G L+PFTSRED DFF LEM+MRS+ PLCGRDHL++RSYY+PVKN+IDGDLCE
Sbjct: 1160 TISGAIGALIPFTSREDVDFFSTLEMNMRSDCLPLCGRDHLAYRSYYFPVKNIIDGDLCE 1219
Query: 439 QFNSLDPGKQKAIAGDLERTPAEDQKNLK 525
QF++L+ KQ +I+ +L R+P+E K L+
Sbjct: 1220 QFSTLNYQKQLSISEELSRSPSEVIKKLE 1248
Score = 97.5 bits (232), Expect = 2e-19
Identities = 42/78 (53%), Positives = 59/78 (75%)
Frame = +2
Query: 11 ILDYDTIAVSDKFGNVAIMRLPQSVSDDVDEDPTGNKALWDRGLLNGASQKGDVVVNFHV 190
+LDYDT+A +DKFGN+ ++RLP +SD+V+EDPTG K ++ G LNGA K D + NF V
Sbjct: 1077 MLDYDTVAGADKFGNIFVLRLPLLISDEVEEDPTGTKLKFESGTLNGAPHKLDHIANFFV 1136
Query: 191 GETVTSLQRATLIPGGSE 244
G+TVT+L + +L+ GG E
Sbjct: 1137 GDTVTTLNKTSLVVGGPE 1154
>UniRef50_Q2HWB0 Cluster: CPSF A subunit, C-terminal; WD40-like;
n=1; Medicago truncatula|Rep: CPSF A subunit,
C-terminal; WD40-like - Medicago truncatula (Barrel
medic)
Length = 632
Score = 123 bits (296), Expect = 4e-27
Identities = 54/93 (58%), Positives = 71/93 (76%)
Frame = +1
Query: 259 TISGSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVIDGDLCE 438
T+ GS+G L FTSR+D DFF HLEMHMR +N PLCGRDH+++RS Y+PVK+VIDGDLCE
Sbjct: 539 TVMGSIGALHAFTSRDDVDFFSHLEMHMRQDNPPLCGRDHMAYRSAYFPVKDVIDGDLCE 598
Query: 439 QFNSLDPGKQKAIAGDLERTPAEDQKNLKTFEL 537
QF +L Q+ IA +L+RT E K L+ +++
Sbjct: 599 QFPTLPMDLQRKIADELDRTRGEILKKLEEYKI 631
Score = 66.5 bits (155), Expect = 5e-10
Identities = 27/52 (51%), Positives = 38/52 (73%)
Frame = +2
Query: 89 DDVDEDPTGNKALWDRGLLNGASQKGDVVVNFHVGETVTSLQRATLIPGGSE 244
D + EDPTG + W++G LNGA K + +V FHVG+ ++ LQ+A+LIPGG E
Sbjct: 482 DTMAEDPTGGRIKWEQGKLNGAPNKVEEIVQFHVGDVISCLQKASLIPGGGE 533
>UniRef50_A7RHF3 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella vectensis
Length = 1171
Score = 121 bits (292), Expect = 1e-26
Identities = 55/78 (70%), Positives = 64/78 (82%)
Frame = +2
Query: 14 LDYDTIAVSDKFGNVAIMRLPQSVSDDVDEDPTGNKALWDRGLLNGASQKGDVVVNFHVG 193
LDYDT+A +DKFGN+ +RLP SDDVDEDPTG KA WDRGLLNGA QK + + N+ VG
Sbjct: 1009 LDYDTLAGADKFGNIFTVRLPSGSSDDVDEDPTGTKAFWDRGLLNGAQQKLETMCNYFVG 1068
Query: 194 ETVTSLQRATLIPGGSEA 247
ETV SLQ+ATLIPGGSE+
Sbjct: 1069 ETVLSLQKATLIPGGSES 1086
Score = 91.9 bits (218), Expect = 1e-17
Identities = 48/94 (51%), Positives = 61/94 (64%)
Frame = +1
Query: 244 STTIATISGSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVID 423
S T+SG +G+L+PFTSRED DFFQHLEMH+RSE P +V+D
Sbjct: 1086 SLVFTTLSGGVGMLVPFTSREDIDFFQHLEMHLRSEQ----------------PSLSVVD 1129
Query: 424 GDLCEQFNSLDPGKQKAIAGDLERTPAEDQKNLK 525
GDLCE +NSLD K++ IA +L+RTPAE K L+
Sbjct: 1130 GDLCEHYNSLDYSKRRTIAEELDRTPAEVSKKLE 1163
>UniRef50_A4RYT7 Cluster: Predicted protein; n=3; Viridiplantae|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 1196
Score = 116 bits (279), Expect = 5e-25
Identities = 52/89 (58%), Positives = 65/89 (73%)
Frame = +1
Query: 259 TISGSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVIDGDLCE 438
T G +G LLPF+SR + +FF HLEMHMR E + GRDH++FRSYY PVKNVIDGDLCE
Sbjct: 1101 TFMGGIGCLLPFSSRSEIEFFTHLEMHMRQEAPSIVGRDHMAFRSYYAPVKNVIDGDLCE 1160
Query: 439 QFNSLDPGKQKAIAGDLERTPAEDQKNLK 525
QF +L Q+ IA +++RTP E K L+
Sbjct: 1161 QFGALPADVQRRIAEEMDRTPGEILKKLE 1189
Score = 92.3 bits (219), Expect = 8e-18
Identities = 39/77 (50%), Positives = 56/77 (72%)
Frame = +2
Query: 14 LDYDTIAVSDKFGNVAIMRLPQSVSDDVDEDPTGNKALWDRGLLNGASQKGDVVVNFHVG 193
LDYDT+A +DKFGN+ + RLP+ VS+D+D+DPTG K ++ +G+LNGA K + ++G
Sbjct: 1019 LDYDTLAGADKFGNIFVNRLPKDVSEDMDDDPTGGKNIYSQGVLNGAPNKSETSAQTYIG 1078
Query: 194 ETVTSLQRATLIPGGSE 244
ETV +L + L PGG E
Sbjct: 1079 ETVCALTKGALQPGGIE 1095
>UniRef50_Q8I574 Cluster: Splicing factor 3b, subunit 3, 130kD,
putative; n=1; Plasmodium falciparum 3D7|Rep: Splicing
factor 3b, subunit 3, 130kD, putative - Plasmodium
falciparum (isolate 3D7)
Length = 1329
Score = 114 bits (274), Expect = 2e-24
Identities = 48/90 (53%), Positives = 69/90 (76%)
Frame = +1
Query: 256 ATISGSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVIDGDLC 435
+TI G++G +P+ ++E+ + QHLE+ +R+E PLCGR+H+ FRSYY+PV+NV+DGDLC
Sbjct: 1233 STIMGTIGAFIPYDNKEELELTQHLEIILRTEKPPLCGREHIFFRSYYHPVQNVVDGDLC 1292
Query: 436 EQFNSLDPGKQKAIAGDLERTPAEDQKNLK 525
EQF+SL QK IA DLERTP + + L+
Sbjct: 1293 EQFSSLSYDAQKKIANDLERTPEDILRKLE 1322
Score = 55.6 bits (128), Expect = 9e-07
Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Frame = +2
Query: 5 TSILDYDTIAVSDKFGNVAIMRLPQSVSDDVDEDPTGNKALWDRGLLNGA--SQKGDVVV 178
+ ILD+ TI +DKF +V I+R+P+ DE NK + ++N + ++K + ++
Sbjct: 1149 SEILDHHTIMAADKFDSVFILRVPEEAKQ--DEYGITNKCWYGGEIMNSSTKNRKLEHMM 1206
Query: 179 NFHVGETVTSLQRATLIPGGSE 244
+FH+GE VTS+Q+ L P SE
Sbjct: 1207 SFHIGEIVTSMQKVRLSPTSSE 1228
>UniRef50_A0ED07 Cluster: Chromosome undetermined scaffold_9, whole
genome shotgun sequence; n=3; Oligohymenophorea|Rep:
Chromosome undetermined scaffold_9, whole genome shotgun
sequence - Paramecium tetraurelia
Length = 1178
Score = 108 bits (260), Expect = 9e-23
Identities = 47/89 (52%), Positives = 65/89 (73%)
Frame = +1
Query: 259 TISGSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVIDGDLCE 438
T GS+ L PF ++ED DFF HLEM++R E+ PL GRDH+ FRS Y P K++IDGDLC+
Sbjct: 1083 TSMGSIAALYPFDNKEDIDFFLHLEMYLRVEHQPLSGRDHMQFRSAYGPCKSIIDGDLCD 1142
Query: 439 QFNSLDPGKQKAIAGDLERTPAEDQKNLK 525
QF ++ KQ+A+A + +RTPA+ K L+
Sbjct: 1143 QFGNMQYNKQRAVAEEFDRTPADIIKKLE 1171
Score = 74.1 bits (174), Expect = 2e-12
Identities = 32/80 (40%), Positives = 50/80 (62%)
Frame = +2
Query: 5 TSILDYDTIAVSDKFGNVAIMRLPQSVSDDVDEDPTGNKALWDRGLLNGASQKGDVVVNF 184
+++LDY T+ DKF N+ + R+P + ++ +E P K D+G +NGA K D + NF
Sbjct: 998 STVLDYHTVIAGDKFENIFVSRVPLDIDEEQEEHPYEYKMKMDQGCMNGAPFKMDQICNF 1057
Query: 185 HVGETVTSLQRATLIPGGSE 244
+VGE +TSLQ+ L+ SE
Sbjct: 1058 YVGEVITSLQKIALVSTSSE 1077
>UniRef50_Q7RIV2 Cluster: Drosophila melanogaster CG13900 gene
product; n=10; Plasmodium|Rep: Drosophila melanogaster
CG13900 gene product - Plasmodium yoelii yoelii
Length = 1235
Score = 105 bits (253), Expect = 6e-22
Identities = 46/90 (51%), Positives = 67/90 (74%)
Frame = +1
Query: 256 ATISGSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVIDGDLC 435
+TI G++G +P+ S+E+ + QHLE+ +R+E LCGR+H+ FRSYY+PV++VIDGDLC
Sbjct: 1139 STIMGTIGAFIPYDSKEELELTQHLEIILRTEKHSLCGREHIFFRSYYHPVQHVIDGDLC 1198
Query: 436 EQFNSLDPGKQKAIAGDLERTPAEDQKNLK 525
EQF+SL Q+ I DLE+TP E + L+
Sbjct: 1199 EQFSSLPFEVQRKIGSDLEKTPDEILRKLE 1228
Score = 44.8 bits (101), Expect = 0.002
Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 14/94 (14%)
Frame = +2
Query: 5 TSILDYDTIAVSDKFGNVAIMRLP----------QSVSDDVDEDPTG--NKALWDRGLLN 148
+ ILD+ TI +DKF +V I+R+ V ++ ++ G NK + ++N
Sbjct: 1041 SEILDHHTIIAADKFDSVFILRVSLLTFFITPFCHLVPEEAKQEEYGIANKCWYGGEVIN 1100
Query: 149 GASQ--KGDVVVNFHVGETVTSLQRATLIPGGSE 244
+++ K + +++FH+GE VTSLQ+ L P SE
Sbjct: 1101 SSTKNRKMEHIMSFHIGEIVTSLQKVKLSPTSSE 1134
>UniRef50_Q5KP25 Cluster: Pre-mRNA-splicing factor RSE1; n=3;
Dikarya|Rep: Pre-mRNA-splicing factor RSE1 - Cryptococcus
neoformans (Filobasidiella neoformans)
Length = 1217
Score = 103 bits (247), Expect = 3e-21
Identities = 46/89 (51%), Positives = 65/89 (73%)
Frame = +1
Query: 259 TISGSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVIDGDLCE 438
TISG++G L+PF S +D +F LEMHMR+++ L GRDH+++R YY P+K V+DGDLCE
Sbjct: 1121 TISGAVGALVPFVSSDDIEFMSTLEMHMRTQDISLVGRDHIAYRGYYVPIKGVVDGDLCE 1180
Query: 439 QFNSLDPGKQKAIAGDLERTPAEDQKNLK 525
F+ L KQ+AIA DL+R+ + K L+
Sbjct: 1181 SFSLLPYPKQQAIALDLDRSVGDVLKKLE 1209
Score = 77.4 bits (182), Expect = 3e-13
Identities = 32/77 (41%), Positives = 53/77 (68%)
Frame = +2
Query: 14 LDYDTIAVSDKFGNVAIMRLPQSVSDDVDEDPTGNKALWDRGLLNGASQKGDVVVNFHVG 193
+DY+T+A DKFGN+ I RL S+S+ VD+DPTG L ++ L GA+ K +++ ++++G
Sbjct: 1039 VDYETVACGDKFGNIFINRLDPSISEKVDDDPTGATILHEKSFLMGAAHKTEMIGHYNIG 1098
Query: 194 ETVTSLQRATLIPGGSE 244
VTS+ + L+ GG +
Sbjct: 1099 SVVTSITKIPLVAGGRD 1115
>UniRef50_A7ATX1 Cluster: Splicing factor 3b, subunit 3, 130kD,
putative; n=1; Babesia bovis|Rep: Splicing factor 3b,
subunit 3, 130kD, putative - Babesia bovis
Length = 1169
Score = 101 bits (243), Expect = 1e-20
Identities = 43/80 (53%), Positives = 58/80 (72%)
Frame = +1
Query: 259 TISGSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVIDGDLCE 438
T+ GS+G L+PF S+++ DF QHLEM M +E PLCGR+H +RSYY PV+ V+DGDLCE
Sbjct: 1074 TVMGSIGALVPFQSKDELDFLQHLEMLMATEAPPLCGREHSFYRSYYVPVQQVVDGDLCE 1133
Query: 439 QFNSLDPGKQKAIAGDLERT 498
QF L +Q+ +A L+ T
Sbjct: 1134 QFRHLTEAQQRKVAQQLDTT 1153
>UniRef50_Q9UTT2 Cluster: Pre-mRNA-splicing factor rse1; n=17;
Dikarya|Rep: Pre-mRNA-splicing factor rse1 -
Schizosaccharomyces pombe (Fission yeast)
Length = 1206
Score = 100 bits (240), Expect = 2e-20
Identities = 48/90 (53%), Positives = 62/90 (68%)
Frame = +1
Query: 268 GSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVIDGDLCEQFN 447
G++GV PF ++ED FFQ LE +R E PL GRDHL++RSYY PVK VIDGDLCE +
Sbjct: 1114 GTVGVFTPFINQEDVRFFQQLEFLLRKECPPLAGRDHLAYRSYYAPVKCVIDGDLCEMYY 1173
Query: 448 SLDPGKQKAIAGDLERTPAEDQKNLKTFEL 537
SL Q+ IA +L+RT AE K ++ F +
Sbjct: 1174 SLPHPVQEMIANELDRTIAEVSKKIEDFRV 1203
Score = 65.7 bits (153), Expect = 8e-10
Identities = 29/78 (37%), Positives = 48/78 (61%)
Frame = +2
Query: 11 ILDYDTIAVSDKFGNVAIMRLPQSVSDDVDEDPTGNKALWDRGLLNGASQKGDVVVNFHV 190
++DYDT+A DKFGN+ ++R P+ VS DE+ + +K + ++ LN K D++ +F
Sbjct: 1028 LVDYDTLAGGDKFGNIWLLRCPEHVSKLADEENSESKLIHEKPFLNSTPHKLDLMAHFFT 1087
Query: 191 GETVTSLQRATLIPGGSE 244
+ TSLQ+ L+ G E
Sbjct: 1088 NDIPTSLQKVQLVEGARE 1105
>UniRef50_Q2H7K6 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized protein
- Chaetomium globosum (Soil fungus)
Length = 979
Score = 98.3 bits (234), Expect = 1e-19
Identities = 42/85 (49%), Positives = 59/85 (69%)
Frame = +1
Query: 268 GSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVIDGDLCEQFN 447
G++GV +PF +RED DFF LE HMR E L GRDHL++R YY P K V+DGDLCE++
Sbjct: 803 GTVGVFVPFVTREDADFFLALEQHMRGEEPSLIGRDHLAYRGYYEPAKGVVDGDLCERYQ 862
Query: 448 SLDPGKQKAIAGDLERTPAEDQKNL 522
L K++ IA +L+R+ E ++ +
Sbjct: 863 LLPGDKKQRIAAELDRSVREVERKI 887
Score = 60.5 bits (140), Expect = 3e-08
Identities = 30/80 (37%), Positives = 47/80 (58%)
Frame = +2
Query: 5 TSILDYDTIAVSDKFGNVAIMRLPQSVSDDVDEDPTGNKALWDRGLLNGASQKGDVVVNF 184
T+++DYD++A DKFGN I+R PQ S + DE P ++ L R L+GA + + +F
Sbjct: 716 TTMVDYDSVAGGDKFGNFWIVRTPQQASLEADE-PGAHRLLHAREHLHGAPHRLQLTAHF 774
Query: 185 HVGETVTSLQRATLIPGGSE 244
H + T + + L+ GG E
Sbjct: 775 HTQDIPTGITKTHLVVGGQE 794
>UniRef50_Q0V0M1 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 1273
Score = 96.3 bits (229), Expect = 5e-19
Identities = 42/78 (53%), Positives = 57/78 (73%)
Frame = +1
Query: 256 ATISGSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVIDGDLC 435
A + G+LG L+PF SR H FQ LE+ +RS++ P+ GRDHL+FRSY+ PVK+VIDGDL
Sbjct: 1146 AGLQGTLGALIPFNSRRQHKMFQQLELQLRSDDKPMSGRDHLAFRSYFNPVKSVIDGDLI 1205
Query: 436 EQFNSLDPGKQKAIAGDL 489
E+F L K+++I G L
Sbjct: 1206 ERFLVLSRDKRESIVGQL 1223
Score = 66.1 bits (154), Expect = 6e-10
Identities = 30/77 (38%), Positives = 45/77 (58%)
Frame = +2
Query: 5 TSILDYDTIAVSDKFGNVAIMRLPQSVSDDVDEDPTGNKALWDRGLLNGASQKGDVVVNF 184
T +LDYDT DKFGN+ ++R PQ VS+ DE P G+ L D+ L G + + D V ++
Sbjct: 1062 TEMLDYDTTVGGDKFGNLWLVRCPQKVSESSDESPDGSDILVDKSYLGGTANRLDSVAHY 1121
Query: 185 HVGETVTSLQRATLIPG 235
+ S+Q+ L+ G
Sbjct: 1122 FANDIPISIQKTHLLSG 1138
>UniRef50_Q4N305 Cluster: Putative uncharacterized protein; n=1;
Theileria parva|Rep: Putative uncharacterized protein -
Theileria parva
Length = 1231
Score = 88.2 bits (209), Expect = 1e-16
Identities = 42/89 (47%), Positives = 59/89 (66%)
Frame = +1
Query: 259 TISGSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVIDGDLCE 438
T+ GS+GVL+PF S+++ DF QHLEM + ++ + GR+ FRSYY+PV+N++DGDLCE
Sbjct: 1137 TLMGSIGVLIPFVSKDELDFLQHLEMLLCNQIDTVTGREVQMFRSYYFPVQNIVDGDLCE 1196
Query: 439 QFNSLDPGKQKAIAGDLERTPAEDQKNLK 525
F +L K +A L AE K LK
Sbjct: 1197 MFTALGDEKFN-VANQLNLKVAEVVKKLK 1224
>UniRef50_UPI0000498842 Cluster: splicing factor 3b subunit 3; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: splicing factor 3b
subunit 3 - Entamoeba histolytica HM-1:IMSS
Length = 1108
Score = 86.2 bits (204), Expect = 6e-16
Identities = 41/91 (45%), Positives = 55/91 (60%)
Frame = +1
Query: 262 ISGSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVIDGDLCEQ 441
+ G +GVL+PF RED +FF LEM +++ SPL S+R YP VIDGDLC+
Sbjct: 1013 LMGRIGVLIPFNFREDVEFFSKLEMEIKNNYSPLLSNSFDSYRGTNYPGIGVIDGDLCDY 1072
Query: 442 FNSLDPGKQKAIAGDLERTPAEDQKNLKTFE 534
FN +DP Q IA +LE TP + Q + F+
Sbjct: 1073 FNQMDPKLQLQIANNLEMTPVQIQLKCEQFK 1103
>UniRef50_Q4UAB5 Cluster: Splicing factor 3b subunit, putative; n=1;
Theileria annulata|Rep: Splicing factor 3b subunit,
putative - Theileria annulata
Length = 1340
Score = 85.4 bits (202), Expect = 1e-15
Identities = 42/89 (47%), Positives = 59/89 (66%)
Frame = +1
Query: 259 TISGSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVIDGDLCE 438
T+ GS+GVL+PF S+++ DF QHLEM M ++ + GR+ FRSYY+PV+N++DGDLCE
Sbjct: 1247 TLMGSIGVLVPFVSKDELDFLQHLEMLMCNQIDTVTGREVQMFRSYYFPVQNIVDGDLCE 1306
Query: 439 QFNSLDPGKQKAIAGDLERTPAEDQKNLK 525
+ +LD + IA L E K LK
Sbjct: 1307 MYMTLD--DKYNIANQLNLKVNEIIKKLK 1333
>UniRef50_Q5CHP5 Cluster: CG13900 gene product; n=2;
Cryptosporidium|Rep: CG13900 gene product -
Cryptosporidium hominis
Length = 1318
Score = 84.2 bits (199), Expect = 2e-15
Identities = 42/92 (45%), Positives = 53/92 (57%)
Frame = +1
Query: 259 TISGSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVIDGDLCE 438
T+ GS+G L P + ED + LE+ +R + S L RDHL FRSYY PV NVIDGD C+
Sbjct: 1223 TVLGSIGSLSPILNNEDIELLSKLEILLRKQKSTLLSRDHLMFRSYYSPVHNVIDGDFCQ 1282
Query: 439 QFNSLDPGKQKAIAGDLERTPAEDQKNLKTFE 534
F LD Q IA L+ T E K L ++
Sbjct: 1283 TFTILDSKIQSEIASKLDVTVEEIYKKLDDYK 1314
Score = 57.2 bits (132), Expect = 3e-07
Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Frame = +2
Query: 11 ILDYDTIAVSDKFGNVAIMRLPQSVSDDVD--EDPTGNKALWDRGLLNGASQKGDVVVNF 184
+LDY TIAVSDKF N+ + R+P SDD T N L+ + + + V F
Sbjct: 1140 VLDYHTIAVSDKFDNIIVSRVPVEASDDFSFVTSFTDNNNSQSSALMR--THQINTVAQF 1197
Query: 185 HVGETVTSLQRATLIPGGSEA 247
H+G+ VT LQ++ L P +EA
Sbjct: 1198 HLGDIVTCLQKSQLTPTSAEA 1218
>UniRef50_UPI0000499BE9 Cluster: splicing factor 3B subunit 3; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: splicing factor 3B
subunit 3 - Entamoeba histolytica HM-1:IMSS
Length = 1145
Score = 81.4 bits (192), Expect = 2e-14
Identities = 40/85 (47%), Positives = 53/85 (62%)
Frame = +1
Query: 268 GSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVIDGDLCEQFN 447
G L L+P S+ D DF+QHLEMHMR + L R+H+SFRS PVK+ +DGDLCE +
Sbjct: 1052 GGLSALIPLQSQNDIDFYQHLEMHMRVHWTNLTDRNHISFRSSIVPVKDTVDGDLCELYE 1111
Query: 448 SLDPGKQKAIAGDLERTPAEDQKNL 522
L Q+ IA ++E+ E K L
Sbjct: 1112 RLPYEIQQEIAEEMEKEVNEIIKKL 1136
Score = 42.7 bits (96), Expect = 0.007
Identities = 22/74 (29%), Positives = 37/74 (50%)
Frame = +2
Query: 14 LDYDTIAVSDKFGNVAIMRLPQSVSDDVDEDPTGNKALWDRGLLNGASQKGDVVVNFHVG 193
L+ T+ SDKFG + + +LP+ + + +P + + G+S K F VG
Sbjct: 968 LNQSTVLASDKFGEIFMYQLPKEIEEQA-LNPFSTLLQPHKTIYEGSSYKMVTATQFFVG 1026
Query: 194 ETVTSLQRATLIPG 235
+ TS + +LIPG
Sbjct: 1027 DIATSFAQCSLIPG 1040
>UniRef50_Q5A7S5 Cluster: Pre-mRNA-splicing factor RSE1; n=1; Candida
albicans|Rep: Pre-mRNA-splicing factor RSE1 - Candida
albicans (Yeast)
Length = 1219
Score = 73.7 bits (173), Expect = 3e-12
Identities = 32/87 (36%), Positives = 55/87 (63%)
Frame = +1
Query: 262 ISGSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVIDGDLCEQ 441
+ G++G+L+P S+ + + +L+++M+ + L G+DHL RSYY P+KNVIDGDL E+
Sbjct: 1124 LQGTIGLLIPLVSKSEVELLFNLQLYMQQSQNNLVGKDHLKLRSYYNPIKNVIDGDLLER 1183
Query: 442 FNSLDPGKQKAIAGDLERTPAEDQKNL 522
F D + I+ L ++ + +K L
Sbjct: 1184 FLEFDISLKIEISRKLNKSVNDIEKKL 1210
Score = 54.0 bits (124), Expect = 3e-06
Identities = 27/78 (34%), Positives = 42/78 (53%)
Frame = +2
Query: 14 LDYDTIAVSDKFGNVAIMRLPQSVSDDVDEDPTGNKALWDRGLLNGASQKGDVVVNFHVG 193
LD DT+ DKFGN+ + R+ + +S D+D T K G+LN K ++ FH+G
Sbjct: 1043 LDIDTLIGGDKFGNIFVTRIDEDISKQADDDWTILKT--QDGILNSCPYKLQNLIEFHIG 1100
Query: 194 ETVTSLQRATLIPGGSEA 247
+ +TS L G+E+
Sbjct: 1101 DIITSFNLGCLNLAGTES 1118
>UniRef50_Q6BYK1 Cluster: Pre-mRNA-splicing factor RSE1; n=2;
Saccharomycetaceae|Rep: Pre-mRNA-splicing factor RSE1 -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 1256
Score = 68.9 bits (161), Expect = 9e-11
Identities = 39/100 (39%), Positives = 54/100 (54%), Gaps = 13/100 (13%)
Frame = +1
Query: 262 ISGSLGVLLPFTSREDHDFFQHLEMHMRS-------------ENSPLCGRDHLSFRSYYY 402
I G+LG+LLP ++ + F L++ +R L G+DHL FRSYY
Sbjct: 1148 IQGTLGLLLPLSTENEVKFLGDLQLLLRKYFDYNFDDFDKDKNGYNLLGKDHLKFRSYYN 1207
Query: 403 PVKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPAEDQKNL 522
PVKNV+DGDL E+F L + I +L RTP E +K +
Sbjct: 1208 PVKNVMDGDLIERFYELSQSMKIRIGTELNRTPREIEKKI 1247
Score = 56.0 bits (129), Expect = 7e-07
Identities = 26/78 (33%), Positives = 45/78 (57%)
Frame = +2
Query: 14 LDYDTIAVSDKFGNVAIMRLPQSVSDDVDEDPTGNKALWDRGLLNGASQKGDVVVNFHVG 193
LDYDTI DKFGN+ + R+P+++S D+D + + LNG+ + + F++
Sbjct: 1067 LDYDTIIGGDKFGNIFVSRVPETISQQSDKD--WSLLRYQESYLNGSGSRLKNICEFYLQ 1124
Query: 194 ETVTSLQRATLIPGGSEA 247
+ TS + +L+ GG E+
Sbjct: 1125 DIPTSFTKGSLVMGGKES 1142
>UniRef50_A5DFJ2 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 1206
Score = 66.9 bits (156), Expect = 4e-10
Identities = 39/100 (39%), Positives = 52/100 (52%), Gaps = 13/100 (13%)
Frame = +1
Query: 262 ISGSLGVLLPFTSREDHDFFQHLEMHMRSENSP-------------LCGRDHLSFRSYYY 402
+ GSLG P S+ + FF LE +R P L G+D L FR YY
Sbjct: 1098 LCGSLGFFEPLISKLEVSFFTALENSIRKVLDPNLEEHDKKRLYCQLLGKDQLKFRGYYN 1157
Query: 403 PVKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPAEDQKNL 522
PVKNVIDGD E + LDP + IA +L+RTP + ++ +
Sbjct: 1158 PVKNVIDGDFVEYYFELDPRTKTKIATELDRTPRDIERKI 1197
Score = 44.8 bits (101), Expect = 0.002
Identities = 24/78 (30%), Positives = 41/78 (52%)
Frame = +2
Query: 14 LDYDTIAVSDKFGNVAIMRLPQSVSDDVDEDPTGNKALWDRGLLNGASQKGDVVVNFHVG 193
LD+DT+ DKFGNV + R+P ++S D++ + + LN A + + F +
Sbjct: 1017 LDHDTVIGGDKFGNVFVNRIPFTLSKQADQE--WSLVKYQDHYLNSAGNRLKGLCEFFLQ 1074
Query: 194 ETVTSLQRATLIPGGSEA 247
+ T + TL+ GG E+
Sbjct: 1075 DIPTLFFKGTLVTGGKES 1092
>UniRef50_Q4T683 Cluster: Chromosome undetermined SCAF8882, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF8882,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 149
Score = 60.1 bits (139), Expect = 4e-08
Identities = 25/40 (62%), Positives = 34/40 (85%)
Frame = +1
Query: 406 VKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPAEDQKNLK 525
V+NVIDGDLCEQ+NS++P KQK++A +L+RTP E K L+
Sbjct: 102 VQNVIDGDLCEQYNSMEPHKQKSVAEELDRTPPEVSKKLE 141
>UniRef50_Q04693 Cluster: Pre-mRNA-splicing factor RSE1; n=2;
Saccharomyces cerevisiae|Rep: Pre-mRNA-splicing factor
RSE1 - Saccharomyces cerevisiae (Baker's yeast)
Length = 1361
Score = 57.2 bits (132), Expect = 3e-07
Identities = 25/50 (50%), Positives = 33/50 (66%)
Frame = +1
Query: 361 LCGRDHLSFRSYYYPVKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPAED 510
+ GRDH +RSYY PV+ VIDGDLCE F L +Q+ +A +L+ ED
Sbjct: 1299 ILGRDHQEYRSYYAPVRKVIDGDLCENFLRLSLNEQEFLAKNLKSVQVED 1348
>UniRef50_A7TN11 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 1346
Score = 55.2 bits (127), Expect = 1e-06
Identities = 24/50 (48%), Positives = 34/50 (68%)
Frame = +1
Query: 361 LCGRDHLSFRSYYYPVKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPAED 510
+ R+H +RSYY PVKN+IDGDLCE+F L+ ++ I +L+ T ED
Sbjct: 1284 IVNRNHSKYRSYYAPVKNIIDGDLCERFLYLNSNERLEICKNLKDTKPED 1333
>UniRef50_Q753D4 Cluster: Pre-mRNA-splicing factor RSE1; n=1;
Eremothecium gossypii|Rep: Pre-mRNA-splicing factor RSE1
- Ashbya gossypii (Yeast) (Eremothecium gossypii)
Length = 1288
Score = 54.4 bits (125), Expect = 2e-06
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Frame = +1
Query: 361 LCGRDHLSFRSYYYPVKNVIDGDLCEQFNSLDPGKQKAIAGDLE-RTPAEDQKNLKTFEL 537
L GRD + +RSYY PV++V DGDLCEQF L P ++ +A ++ R+ E ++ +
Sbjct: 1226 LVGRDAMMYRSYYNPVRHVTDGDLCEQFLELYPSEKNFLAARVDNRSVQEIERRIN---- 1281
Query: 538 DMRSN 552
DMR+N
Sbjct: 1282 DMRTN 1286
>UniRef50_A5DXW5 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 1223
Score = 50.8 bits (116), Expect = 3e-05
Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 14/101 (13%)
Frame = +1
Query: 262 ISGSLGVLLPFTSREDHDFFQHLEMHMR--------------SENSPLCGRDHLSFRSYY 399
I G++GVL+ ++ + + +L++ +R S SPL G+DHL RSY+
Sbjct: 1115 IQGTIGVLILLLTKHEVELLFNLQLELRKLCNHDDDAVSGVASWISPL-GKDHLKHRSYF 1173
Query: 400 YPVKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPAEDQKNL 522
PVKN+IDGD E + L + I ++++P E +K L
Sbjct: 1174 NPVKNIIDGDFVECYLQLLQNWKVKIGEAIDKSPNEIEKRL 1214
Score = 37.1 bits (82), Expect = 0.34
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = +2
Query: 8 SILDYDTIAVSDKFGNVAIMRLPQSVSDDVDED 106
S LDYDTI DKFG ++I RL S VD++
Sbjct: 994 SKLDYDTIICGDKFGQISISRLDSQDSRQVDQE 1026
>UniRef50_A2DD61 Cluster: CPSF A subunit region family protein; n=1;
Trichomonas vaginalis G3|Rep: CPSF A subunit region
family protein - Trichomonas vaginalis G3
Length = 1142
Score = 50.4 bits (115), Expect = 3e-05
Identities = 22/66 (33%), Positives = 36/66 (54%)
Frame = +2
Query: 14 LDYDTIAVSDKFGNVAIMRLPQSVSDDVDEDPTGNKALWDRGLLNGASQKGDVVVNFHVG 193
LD T+ DKFG+ I+RLP ++DD + DP+ ++ GA K ++ +H+G
Sbjct: 967 LDRSTVCCGDKFGSFCILRLPPDINDDAEIDPSDVGHAFENEKFPGAKNKVELSNMYHIG 1026
Query: 194 ETVTSL 211
+T L
Sbjct: 1027 SPITGL 1032
Score = 47.6 bits (108), Expect = 2e-04
Identities = 29/86 (33%), Positives = 40/86 (46%)
Frame = +1
Query: 244 STTIATISGSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVID 423
S T+ G +G+ +P + D F+ LE M+ GR FRSYY P+K V D
Sbjct: 1043 SIVYGTVDGEIGLFIPLKTDTDARLFRLLEDEMKKLIKSPVGRFIEQFRSYYTPLKCVND 1102
Query: 424 GDLCEQFNSLDPGKQKAIAGDLERTP 501
+L + L QK IA L+ P
Sbjct: 1103 SNLLLSYIDLPTNLQKEIAEKLKVKP 1128
>UniRef50_Q6CAH5 Cluster: Pre-mRNA-splicing factor RSE1; n=1; Yarrowia
lipolytica|Rep: Pre-mRNA-splicing factor RSE1 - Yarrowia
lipolytica (Candida lipolytica)
Length = 1143
Score = 48.4 bits (110), Expect = 1e-04
Identities = 21/75 (28%), Positives = 40/75 (53%)
Frame = +1
Query: 253 IATISGSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVIDGDL 432
+ + G++ +P S + + +E + + + L GRDH FR YY PVK V+DGD+
Sbjct: 1047 VCGLLGTVSAFVPVVSPKQSRDLKTIEKFVCASDPGLMGRDHGRFRGYYVPVKEVVDGDM 1106
Query: 433 CEQFNSLDPGKQKAI 477
+ +D +++ +
Sbjct: 1107 LREVLVMDEKRREEV 1121
Score = 41.5 bits (93), Expect = 0.016
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +2
Query: 14 LDYDTIAVSDKFGNVAIMRLPQSVSDDVDEDPTGNKALWDRGLLNG-ASQKGDVVVNFHV 190
+DY+T+A+ D+FG ++R+P S DED LNG A + D V +FH+
Sbjct: 972 VDYETVALGDRFGGFTMLRIPSEASKLADEDHNAVHLRQLEPTLNGPAHFRFDHVASFHI 1031
Query: 191 GETVTSL 211
+ ++
Sbjct: 1032 EDVPVAI 1038
>UniRef50_Q6CXH8 Cluster: Pre-mRNA-splicing factor RSE1; n=1;
Kluyveromyces lactis|Rep: Pre-mRNA-splicing factor RSE1 -
Kluyveromyces lactis (Yeast) (Candida sphaerica)
Length = 1269
Score = 46.8 bits (106), Expect = 4e-04
Identities = 23/62 (37%), Positives = 34/62 (54%)
Frame = +1
Query: 367 GRDHLSFRSYYYPVKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPAEDQKNLKTFELDMR 546
GRD LS+RS Y P KN+IDG+ EQ + P Q+ IA ++ + + +MR
Sbjct: 1206 GRDFLSYRSSYAPSKNIIDGETLEQLTTYLPSDQRWIASKMKHADSGKLDIFNKYINEMR 1265
Query: 547 SN 552
+N
Sbjct: 1266 TN 1267
>UniRef50_Q6FLQ6 Cluster: Pre-mRNA-splicing factor RSE1; n=1; Candida
glabrata|Rep: Pre-mRNA-splicing factor RSE1 - Candida
glabrata (Yeast) (Torulopsis glabrata)
Length = 1296
Score = 46.8 bits (106), Expect = 4e-04
Identities = 18/27 (66%), Positives = 23/27 (85%)
Frame = +1
Query: 373 DHLSFRSYYYPVKNVIDGDLCEQFNSL 453
DH ++RSYY PVKNVIDGD+CE + +L
Sbjct: 1237 DHTAYRSYYAPVKNVIDGDICETYLNL 1263
>UniRef50_Q0D7W9 Cluster: Os07g0203700 protein; n=5; Oryza
sativa|Rep: Os07g0203700 protein - Oryza sativa subsp.
japonica (Rice)
Length = 666
Score = 44.4 bits (100), Expect = 0.002
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Frame = +1
Query: 256 ATISGSLGVLLPFTSREDHDFFQHLE--MHMRSENSPLCGRDHLSFRSYYYP--VKNVID 423
+T+ GS+ V++P TS E+H Q ++ + + +PL G DH FR P V ++D
Sbjct: 559 STLLGSIFVMIPLTS-EEHQMLQDVQERLSVHPLTAPLLGNDHAEFRRRGIPSGVPPILD 617
Query: 424 GDLCEQFNSLDPGKQ 468
GD+ QF L +Q
Sbjct: 618 GDMLVQFLELTSEQQ 632
>UniRef50_Q3LWA3 Cluster: Splicing factor 3b; n=1; Bigelowiella
natans|Rep: Splicing factor 3b - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain CCMP
621))
Length = 1158
Score = 42.7 bits (96), Expect = 0.007
Identities = 22/71 (30%), Positives = 33/71 (46%)
Frame = +1
Query: 268 GSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVIDGDLCEQFN 447
GS+G+L+P ++ + F++L H+ + + FRS Y VIDGD C Q
Sbjct: 1066 GSIGILIPIKTKFEIVLFRNLFYHLTLGTNHFLSLSNFKFRSSNYISSRVIDGDFCSQIL 1125
Query: 448 SLDPGKQKAIA 480
Q IA
Sbjct: 1126 EFKKSTQLKIA 1136
Score = 35.9 bits (79), Expect = 0.78
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +2
Query: 14 LDYDTIAVSDKFGNVAIMRLPQSVSDDVDEDP 109
LDYDTI +D FGNV + R+PQ ++ DP
Sbjct: 989 LDYDTILGTDYFGNVLVFRIPQLITFKSFLDP 1020
>UniRef50_Q55BV8 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1547
Score = 37.1 bits (82), Expect = 0.34
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Frame = +1
Query: 274 LGVLLPF--TSREDHDFFQHLEMHMRSENS--PLCGRDHLSFRSYYYPVKNVIDGDLCEQ 441
LG ++ F S+ ++ +++ ++ N+ PL DH +RS KN++DGDL Q
Sbjct: 1439 LGSVIVFGKLSKREYRILNNIQQILKKSNNTRPLLNNDHQLYRSELSFSKNMLDGDLLFQ 1498
Query: 442 FNSLDPGKQKAIAGDL 489
F LD Q I +
Sbjct: 1499 FLFLDDEDQLTIINSI 1514
>UniRef50_Q5EFC9 Cluster: Sf3b complex subunit 3; n=3; Trypanosoma
cruzi|Rep: Sf3b complex subunit 3 - Trypanosoma cruzi
Length = 1800
Score = 36.3 bits (80), Expect = 0.59
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = +2
Query: 14 LDYDTIAVSDKFGNVAIMRLPQSVSDDVDE--DPTGNKALWDRGLLNGASQKGDVVVNFH 187
LD TIAV+D+FG+VA +RLPQ+ E + L + Q + H
Sbjct: 1575 LDERTIAVADRFGSVAFLRLPQNARLGFAEPLHQMSDAELXEAERYAAHEQVLQEIAVHH 1634
Query: 188 VGETVTSLQRATLIPGG 238
G+ VT+L+ P G
Sbjct: 1635 TGQLVTALRVHDYDPSG 1651
>UniRef50_UPI000155590D Cluster: PREDICTED: similar to cell surface
glycoprotein OX2 receptor, partial; n=1; Ornithorhynchus
anatinus|Rep: PREDICTED: similar to cell surface
glycoprotein OX2 receptor, partial - Ornithorhynchus
anatinus
Length = 541
Score = 35.5 bits (78), Expect = 1.0
Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Frame = -3
Query: 246 ASEPPGINVALCREVTVSPT*KLTT---TSPFCEAPLSKPLSQSALFPVGSSSTSSLTDC 76
A+ N LC V V PT L CEA KP +Q + P G STSS T
Sbjct: 244 ATSQGNFNCGLCLSVLVPPTVSLVVGKDNQVVCEASAGKPAAQISWVPPGEHSTSSRTH- 302
Query: 75 GNRIIATL 52
GN + +
Sbjct: 303 GNGTVTVV 310
>UniRef50_A2EED7 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 1036
Score = 34.3 bits (75), Expect = 2.4
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +2
Query: 14 LDYDTIAVSDKFGNVAIMRLPQSVSDDVD-EDPTGNKAL--WDRGLLNGASQ---KGDVV 175
LD +++AV DKFG + I+RL + D+ + T + AL + G + D V
Sbjct: 858 LDDNSVAVGDKFGGITILRLSDDFAVDIPWKFATSSTALIQYSEGQKKPIPLDVGRIDRV 917
Query: 176 VNFHVGETVTSL 211
+F VGE VTSL
Sbjct: 918 ASFMVGEMVTSL 929
>UniRef50_A0E766 Cluster: Chromosome undetermined scaffold_80, whole
genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_80,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 604
Score = 34.3 bits (75), Expect = 2.4
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +1
Query: 316 FFQHLEMHMRSENSPLCGRD-HLSFRSYYYPVKNVIDGDLCEQFNSLDPGKQKAIA 480
+F+ +MH+ S + L GR + + S+Y PVK + +G + F S+D + A+A
Sbjct: 75 YFEASQMHLESLKNALGGRVIYRNMASFYEPVKLIGEGLSAKVFQSIDKKSKNAVA 130
>UniRef50_UPI0000EBEC9A Cluster: PREDICTED: similar to KIAA1210
protein; n=1; Bos taurus|Rep: PREDICTED: similar to
KIAA1210 protein - Bos taurus
Length = 1391
Score = 33.9 bits (74), Expect = 3.1
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = -3
Query: 252 SSASEPPGINVALCREVTVSPT*KLTTTSPFCEAPLSKPLSQSALFPVGSSSTSSLTDCG 73
S +P + L + VT +PT + T+PF +AP S S P +S +D
Sbjct: 1187 SRIKKPSQSSEDLSKNVTTAPTKPMLATAPFLQAPTSGSSSSQEEVPESDDQNNSYSDSS 1246
Query: 72 N 70
N
Sbjct: 1247 N 1247
>UniRef50_UPI0000F34693 Cluster: Uncharacterized protein KIAA1210.;
n=1; Bos taurus|Rep: Uncharacterized protein KIAA1210. -
Bos Taurus
Length = 1092
Score = 33.9 bits (74), Expect = 3.1
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = -3
Query: 252 SSASEPPGINVALCREVTVSPT*KLTTTSPFCEAPLSKPLSQSALFPVGSSSTSSLTDCG 73
S +P + L + VT +PT + T+PF +AP S S P +S +D
Sbjct: 792 SRIKKPSQSSEDLSKNVTTAPTKPMLATAPFLQAPTSGSSSSQEEVPESDDQNNSYSDSS 851
Query: 72 N 70
N
Sbjct: 852 N 852
>UniRef50_Q0HKR3 Cluster: Flagellar hook-associated 2 domain
protein; n=4; Shewanella|Rep: Flagellar hook-associated
2 domain protein - Shewanella sp. (strain MR-4)
Length = 455
Score = 33.1 bits (72), Expect = 5.5
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = -3
Query: 174 TTSPFCEAPLSKPLSQSALFPVGSSSTSSLTDCGNRIIATLPNLSDTAIV 25
TTSP E LS + F + S+T SLTD N+I + N TA +
Sbjct: 117 TTSPIGEGALSIKVGSGTAFNIDVSATDSLTDIMNKINKSDDNTDVTATI 166
>UniRef50_Q57XR8 Cluster: Putative uncharacterized protein; n=1;
Trypanosoma brucei|Rep: Putative uncharacterized protein
- Trypanosoma brucei
Length = 1834
Score = 33.1 bits (72), Expect = 5.5
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +2
Query: 14 LDYDTIAVSDKFGNVAIMRLPQ 79
LD TIA D+FGNV +RLPQ
Sbjct: 1611 LDERTIAAGDRFGNVVFLRLPQ 1632
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 579,133,753
Number of Sequences: 1657284
Number of extensions: 11494951
Number of successful extensions: 25532
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 24732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25514
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45221970467
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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