Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00576
         (620 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...   128   4e-30
07_01_0736 - 5600201-5600374,5600455-5600563,5601075-5601196,560...    44   7e-05
05_03_0458 + 14280953-14281866,14281964-14282912                       29   3.9  
12_02_0590 - 20853040-20853081,20853694-20853918,20854995-208558...    28   5.2  
02_04_0480 - 23274945-23275196,23275558-23275623,23276709-232768...    28   6.9  
02_04_0061 + 19361562-19363130                                         28   6.9  

>02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,
            1982950-1983087
          Length = 1228

 Score =  128 bits (309), Expect = 4e-30
 Identities = 57/89 (64%), Positives = 70/89 (78%)
 Frame = +1

Query: 259  TISGSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVIDGDLCE 438
            T+ GS+G LL FTSRED DFF HLEMH+R E+ PLCGRDH+++RS Y+PVK+VIDGDLCE
Sbjct: 1133 TVMGSVGALLAFTSREDVDFFSHLEMHLRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCE 1192

Query: 439  QFNSLDPGKQKAIAGDLERTPAEDQKNLK 525
            QF SL    Q+ IA +L+RTP E  K L+
Sbjct: 1193 QFPSLPADMQRKIADELDRTPGEILKKLE 1221



 Score =  105 bits (252), Expect = 3e-23
 Identities = 44/77 (57%), Positives = 60/77 (77%)
 Frame = +2

Query: 14   LDYDTIAVSDKFGNVAIMRLPQSVSDDVDEDPTGNKALWDRGLLNGASQKGDVVVNFHVG 193
            +D+DT+A +DKFGN+   RLPQ +SD+++EDPTG K  W++G LNGA  K + +V FHVG
Sbjct: 1051 IDFDTMAGADKFGNIYFARLPQDLSDEIEEDPTGGKIKWEQGKLNGAPNKVEEIVQFHVG 1110

Query: 194  ETVTSLQRATLIPGGSE 244
            + VT LQ+A+LIPGG E
Sbjct: 1111 DVVTCLQKASLIPGGGE 1127


>07_01_0736 - 5600201-5600374,5600455-5600563,5601075-5601196,
            5602859-5602935,5603349-5603487,5604306-5604618,
            5605084-5605394,5607245-5609141,5609239-5609374,
            5609519-5609607,5610424-5610507,5611112-5611191,
            5611312-5611446,5612340-5612585
          Length = 1303

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
 Frame = +1

Query: 256  ATISGSLGVLLPFTSREDHDFFQHLE--MHMRSENSPLCGRDHLSFRSYYYP--VKNVID 423
            +T+ GS+ V++P TS E+H   Q ++  + +    +PL G DH  FR    P  V  ++D
Sbjct: 1196 STLLGSIFVMIPLTS-EEHQMLQDVQERLSVHPLTAPLLGNDHAEFRRRGIPSGVPPILD 1254

Query: 424  GDLCEQFNSLDPGKQ 468
            GD+  QF  L   +Q
Sbjct: 1255 GDMLVQFLELTSEQQ 1269


>05_03_0458 + 14280953-14281866,14281964-14282912
          Length = 620

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -3

Query: 270 PTNCCNSSASEPPGINVALCREVTVSPT*KLTTTSPFCEAPLSKP 136
           P + C ++A  PP  N       T +    LTTTS    +P S P
Sbjct: 22  PPSSCRNAAPSPPSSNSTPTSSTTPTVPPSLTTTSSPSSSPSSPP 66


>12_02_0590 -
           20853040-20853081,20853694-20853918,20854995-20855886,
           20856120-20856122,20856284-20856513
          Length = 463

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
 Frame = +2

Query: 80  SVSDDVDEDPTGNKALWDRGLLNGASQKGDVV------VNFHVGETVTSLQRATLIPGGS 241
           +V+D   +   G+  L D G+LNGA Q G++        N    + V   Q A + P  S
Sbjct: 165 TVTDMSTQQLLGSSNLLDAGILNGALQNGNIADMACLETNSEKQDEVPCAQSAEIDPSSS 224

Query: 242 E 244
           E
Sbjct: 225 E 225


>02_04_0480 -
           23274945-23275196,23275558-23275623,23276709-23276851,
           23276947-23277063,23277219-23278683,23279561-23280730
          Length = 1070

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +2

Query: 23  DTIAVSDKFGNVAIMRLPQSVSDDVDEDPTGNKAL--WDRGLLNGASQKGDV 172
           ++I   DK+ N + M +  ++   + E P G + L  W RG++NG +   D+
Sbjct: 752 NSIIAVDKYPNDSEMNISGNIFR-IYEAPAGTRCLEKWKRGIVNGRAALDDI 802


>02_04_0061 + 19361562-19363130
          Length = 522

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = +2

Query: 74  PQSVSDDVD---EDPTGNKALWDRGLLNGASQKGDVVV 178
           P S+S D D    DP  NK LW  G   GA   GD VV
Sbjct: 103 PASLSFDGDLVLTDPAANKVLWSAGAAAGAG--GDRVV 138


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,058,642
Number of Sequences: 37544
Number of extensions: 300686
Number of successful extensions: 612
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)