Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00576
(620 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D87686-1|BAA32662.2| 1253|Homo sapiens KIAA0017 protein protein. 155 1e-37
D13642-1|BAA02805.1| 399|Homo sapiens KIAA0017 protein. 155 1e-37
BC068974-1|AAH68974.1| 1217|Homo sapiens splicing factor 3b, sub... 155 1e-37
BC003146-1|AAH03146.1| 399|Homo sapiens SF3B3 protein protein. 155 1e-37
BC000463-1|AAH00463.1| 399|Homo sapiens SF3B3 protein protein. 155 1e-37
AJ001443-1|CAB56791.1| 1217|Homo sapiens spliceosomal protein SA... 155 1e-37
AK131415-1|BAD18562.1| 803|Homo sapiens protein ( Homo sapiens ... 33 1.1
U37012-1|AAC50293.1| 1442|Homo sapiens cleavage and polyadenylat... 31 2.5
BC017232-1|AAH17232.1| 1443|Homo sapiens cleavage and polyadenyl... 31 2.5
AB046744-1|BAB21613.1| 216|Homo sapiens polyadenylation specifi... 31 2.5
BC027936-1|AAH27936.1| 754|Homo sapiens CXorf22 protein protein. 31 4.3
AL590065-1|CAI40038.2| 976|Homo sapiens chromosome X open readi... 31 4.3
AK126295-1|BAC86517.1| 976|Homo sapiens protein ( Homo sapiens ... 31 4.3
>D87686-1|BAA32662.2| 1253|Homo sapiens KIAA0017 protein protein.
Length = 1253
Score = 155 bits (376), Expect = 1e-37
Identities = 65/94 (69%), Positives = 80/94 (85%)
Frame = +1
Query: 244 STTIATISGSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVID 423
S T+SG +G+L+PFTS EDHDFFQH+EMH+RSE+ PLCGRDHLSFRSYY+PVKNVID
Sbjct: 1152 SLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVID 1211
Query: 424 GDLCEQFNSLDPGKQKAIAGDLERTPAEDQKNLK 525
GDLCEQFNS++P KQK ++ +L+RTP E K L+
Sbjct: 1212 GDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLE 1245
Score = 137 bits (331), Expect = 3e-32
Identities = 58/80 (72%), Positives = 73/80 (91%)
Frame = +2
Query: 8 SILDYDTIAVSDKFGNVAIMRLPQSVSDDVDEDPTGNKALWDRGLLNGASQKGDVVVNFH 187
S+LDYDT+A +DKFGN+ ++RLP + +D+VDEDPTGNKALWDRGLLNGASQK +V++N+H
Sbjct: 1073 SLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYH 1132
Query: 188 VGETVTSLQRATLIPGGSEA 247
VGETV SLQ+ TLIPGGSE+
Sbjct: 1133 VGETVLSLQKTTLIPGGSES 1152
>D13642-1|BAA02805.1| 399|Homo sapiens KIAA0017 protein.
Length = 399
Score = 155 bits (376), Expect = 1e-37
Identities = 65/94 (69%), Positives = 80/94 (85%)
Frame = +1
Query: 244 STTIATISGSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVID 423
S T+SG +G+L+PFTS EDHDFFQH+EMH+RSE+ PLCGRDHLSFRSYY+PVKNVID
Sbjct: 298 SLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVID 357
Query: 424 GDLCEQFNSLDPGKQKAIAGDLERTPAEDQKNLK 525
GDLCEQFNS++P KQK ++ +L+RTP E K L+
Sbjct: 358 GDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLE 391
Score = 137 bits (331), Expect = 3e-32
Identities = 58/80 (72%), Positives = 73/80 (91%)
Frame = +2
Query: 8 SILDYDTIAVSDKFGNVAIMRLPQSVSDDVDEDPTGNKALWDRGLLNGASQKGDVVVNFH 187
S+LDYDT+A +DKFGN+ ++RLP + +D+VDEDPTGNKALWDRGLLNGASQK +V++N+H
Sbjct: 219 SLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYH 278
Query: 188 VGETVTSLQRATLIPGGSEA 247
VGETV SLQ+ TLIPGGSE+
Sbjct: 279 VGETVLSLQKTTLIPGGSES 298
>BC068974-1|AAH68974.1| 1217|Homo sapiens splicing factor 3b, subunit
3, 130kDa protein.
Length = 1217
Score = 155 bits (376), Expect = 1e-37
Identities = 65/94 (69%), Positives = 80/94 (85%)
Frame = +1
Query: 244 STTIATISGSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVID 423
S T+SG +G+L+PFTS EDHDFFQH+EMH+RSE+ PLCGRDHLSFRSYY+PVKNVID
Sbjct: 1116 SLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVID 1175
Query: 424 GDLCEQFNSLDPGKQKAIAGDLERTPAEDQKNLK 525
GDLCEQFNS++P KQK ++ +L+RTP E K L+
Sbjct: 1176 GDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLE 1209
Score = 137 bits (331), Expect = 3e-32
Identities = 58/80 (72%), Positives = 73/80 (91%)
Frame = +2
Query: 8 SILDYDTIAVSDKFGNVAIMRLPQSVSDDVDEDPTGNKALWDRGLLNGASQKGDVVVNFH 187
S+LDYDT+A +DKFGN+ ++RLP + +D+VDEDPTGNKALWDRGLLNGASQK +V++N+H
Sbjct: 1037 SLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYH 1096
Query: 188 VGETVTSLQRATLIPGGSEA 247
VGETV SLQ+ TLIPGGSE+
Sbjct: 1097 VGETVLSLQKTTLIPGGSES 1116
>BC003146-1|AAH03146.1| 399|Homo sapiens SF3B3 protein protein.
Length = 399
Score = 155 bits (376), Expect = 1e-37
Identities = 65/94 (69%), Positives = 80/94 (85%)
Frame = +1
Query: 244 STTIATISGSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVID 423
S T+SG +G+L+PFTS EDHDFFQH+EMH+RSE+ PLCGRDHLSFRSYY+PVKNVID
Sbjct: 298 SLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVID 357
Query: 424 GDLCEQFNSLDPGKQKAIAGDLERTPAEDQKNLK 525
GDLCEQFNS++P KQK ++ +L+RTP E K L+
Sbjct: 358 GDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLE 391
Score = 137 bits (331), Expect = 3e-32
Identities = 58/80 (72%), Positives = 73/80 (91%)
Frame = +2
Query: 8 SILDYDTIAVSDKFGNVAIMRLPQSVSDDVDEDPTGNKALWDRGLLNGASQKGDVVVNFH 187
S+LDYDT+A +DKFGN+ ++RLP + +D+VDEDPTGNKALWDRGLLNGASQK +V++N+H
Sbjct: 219 SLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYH 278
Query: 188 VGETVTSLQRATLIPGGSEA 247
VGETV SLQ+ TLIPGGSE+
Sbjct: 279 VGETVLSLQKTTLIPGGSES 298
>BC000463-1|AAH00463.1| 399|Homo sapiens SF3B3 protein protein.
Length = 399
Score = 155 bits (376), Expect = 1e-37
Identities = 65/94 (69%), Positives = 80/94 (85%)
Frame = +1
Query: 244 STTIATISGSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVID 423
S T+SG +G+L+PFTS EDHDFFQH+EMH+RSE+ PLCGRDHLSFRSYY+PVKNVID
Sbjct: 298 SLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVID 357
Query: 424 GDLCEQFNSLDPGKQKAIAGDLERTPAEDQKNLK 525
GDLCEQFNS++P KQK ++ +L+RTP E K L+
Sbjct: 358 GDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLE 391
Score = 137 bits (331), Expect = 3e-32
Identities = 58/80 (72%), Positives = 73/80 (91%)
Frame = +2
Query: 8 SILDYDTIAVSDKFGNVAIMRLPQSVSDDVDEDPTGNKALWDRGLLNGASQKGDVVVNFH 187
S+LDYDT+A +DKFGN+ ++RLP + +D+VDEDPTGNKALWDRGLLNGASQK +V++N+H
Sbjct: 219 SLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYH 278
Query: 188 VGETVTSLQRATLIPGGSEA 247
VGETV SLQ+ TLIPGGSE+
Sbjct: 279 VGETVLSLQKTTLIPGGSES 298
>AJ001443-1|CAB56791.1| 1217|Homo sapiens spliceosomal protein SAP 130
protein.
Length = 1217
Score = 155 bits (376), Expect = 1e-37
Identities = 65/94 (69%), Positives = 80/94 (85%)
Frame = +1
Query: 244 STTIATISGSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVID 423
S T+SG +G+L+PFTS EDHDFFQH+EMH+RSE+ PLCGRDHLSFRSYY+PVKNVID
Sbjct: 1116 SLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVID 1175
Query: 424 GDLCEQFNSLDPGKQKAIAGDLERTPAEDQKNLK 525
GDLCEQFNS++P KQK ++ +L+RTP E K L+
Sbjct: 1176 GDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLE 1209
Score = 137 bits (331), Expect = 3e-32
Identities = 58/80 (72%), Positives = 73/80 (91%)
Frame = +2
Query: 8 SILDYDTIAVSDKFGNVAIMRLPQSVSDDVDEDPTGNKALWDRGLLNGASQKGDVVVNFH 187
S+LDYDT+A +DKFGN+ ++RLP + +D+VDEDPTGNKALWDRGLLNGASQK +V++N+H
Sbjct: 1037 SLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYH 1096
Query: 188 VGETVTSLQRATLIPGGSEA 247
VGETV SLQ+ TLIPGGSE+
Sbjct: 1097 VGETVLSLQKTTLIPGGSES 1116
>AK131415-1|BAD18562.1| 803|Homo sapiens protein ( Homo sapiens
cDNA FLJ16525 fis, clone OCBBF2005433, weakly similar
to N-CHIMAERIN. ).
Length = 803
Score = 32.7 bits (71), Expect = 1.1
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = -3
Query: 252 SSASEPPGINVALCREVTVSPT*KLTTTSPFCEAPLSKPLSQSALFPVGSSSTS 91
+S+ +PP + +CR V+ + PF E P + LSQ L P S+ST+
Sbjct: 206 ASSEQPPPLPRKMCRSVSTDNL-SPSLLKPFQEGPSGRSLSQENLPPEASASTA 258
>U37012-1|AAC50293.1| 1442|Homo sapiens cleavage and polyadenylation
specificity factor protein.
Length = 1442
Score = 31.5 bits (68), Expect = 2.5
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Frame = +1
Query: 247 TTIATISGSLGVLLPFTSREDHDFF--QHLEMHMRSENSPLCGRD----HLSFRSYYYPV 408
T AT+ G +G+LLP + Q+ M ++ L R H+ R+ V
Sbjct: 1335 TWFATLDGGIGLLLPMQEKTYRRLLMLQNALTTMLPHHAGLNPRAFRMLHVDRRTLQNAV 1394
Query: 409 KNVIDGDLCEQFNSLDPGKQKAIAGDLERTP 501
+NV+DG+L ++ L ++ +A + TP
Sbjct: 1395 RNVLDGELLNRYLYLSTMERSELAKKIGTTP 1425
>BC017232-1|AAH17232.1| 1443|Homo sapiens cleavage and polyadenylation
specific factor 1, 160kDa protein.
Length = 1443
Score = 31.5 bits (68), Expect = 2.5
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Frame = +1
Query: 247 TTIATISGSLGVLLPFTSREDHDFF--QHLEMHMRSENSPLCGRD----HLSFRSYYYPV 408
T AT+ G +G+LLP + Q+ M ++ L R H+ R+ V
Sbjct: 1336 TWFATLDGGIGLLLPMQEKTYRRLLMLQNALTTMLPHHAGLNPRAFRMLHVDRRTLQNAV 1395
Query: 409 KNVIDGDLCEQFNSLDPGKQKAIAGDLERTP 501
+NV+DG+L ++ L ++ +A + TP
Sbjct: 1396 RNVLDGELLNRYLYLSTMERSELAKKIGTTP 1426
>AB046744-1|BAB21613.1| 216|Homo sapiens polyadenylation
specificity factor protein.
Length = 216
Score = 31.5 bits (68), Expect = 2.5
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Frame = +1
Query: 247 TTIATISGSLGVLLPFTSREDHDFF--QHLEMHMRSENSPLCGRD----HLSFRSYYYPV 408
T AT+ G +G+LLP + Q+ M ++ L R H+ R+ V
Sbjct: 109 TWFATLDGGIGLLLPMQEKTYRRLLMLQNALTTMLPHHAGLNPRAFRMLHVDRRTLQNAV 168
Query: 409 KNVIDGDLCEQFNSLDPGKQKAIAGDLERTP 501
+NV+DG+L ++ L ++ +A + TP
Sbjct: 169 RNVLDGELLNRYLYLSTMERSELAKKIGTTP 199
>BC027936-1|AAH27936.1| 754|Homo sapiens CXorf22 protein protein.
Length = 754
Score = 30.7 bits (66), Expect = 4.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 155 SQKGDVVVNFHVGETVTSLQRATLIP 232
+QKG + +N H G S+QR +L+P
Sbjct: 3 TQKGSLTINVHRGSLAMSIQRGSLVP 28
>AL590065-1|CAI40038.2| 976|Homo sapiens chromosome X open reading
frame 22 protein.
Length = 976
Score = 30.7 bits (66), Expect = 4.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 155 SQKGDVVVNFHVGETVTSLQRATLIP 232
+QKG + +N H G S+QR +L+P
Sbjct: 3 TQKGSLTINVHRGSLAMSIQRGSLVP 28
>AK126295-1|BAC86517.1| 976|Homo sapiens protein ( Homo sapiens
cDNA FLJ44315 fis, clone TRACH3000014. ).
Length = 976
Score = 30.7 bits (66), Expect = 4.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 155 SQKGDVVVNFHVGETVTSLQRATLIP 232
+QKG + +N H G S+QR +L+P
Sbjct: 3 TQKGSLTINVHRGSLAMSIQRGSLVP 28
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,139,651
Number of Sequences: 237096
Number of extensions: 1808065
Number of successful extensions: 7861
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7858
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6691573490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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