Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00575
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...   103   2e-23
SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|ch...    27   2.2  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   2.2  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    26   5.0  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    25   6.6  
SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces po...    25   6.6  
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    25   8.8  
SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|ch...    25   8.8  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    25   8.8  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    25   8.8  

>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score =  103 bits (247), Expect = 2e-23
 Identities = 49/90 (54%), Positives = 63/90 (70%)
 Frame = +2

Query: 266  GSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVIDGDLCEQFN 445
            G++GV  PF ++ED  FFQ LE  +R E  PL GRDHL++RSYY PVK VIDGDLCE + 
Sbjct: 1114 GTVGVFTPFINQEDVRFFQQLEFLLRKECPPLAGRDHLAYRSYYAPVKCVIDGDLCEMYY 1173

Query: 446  SLDPGKQKAIAGDLERTPAEVQKNLKTFEL 535
            SL    Q+ IA +L+RT AEV K ++ F +
Sbjct: 1174 SLPHPVQEMIANELDRTIAEVSKKIEDFRV 1203



 Score = 73.7 bits (173), Expect = 2e-14
 Identities = 33/92 (35%), Positives = 56/92 (60%)
 Frame = +3

Query: 9    ILDYDTIAVSDKFGNVAIMRLPQSVSDDVDEDPTGNKALWDRGLLNGASQKGDVVVNFHV 188
            ++DYDT+A  DKFGN+ ++R P+ VS   DE+ + +K + ++  LN    K D++ +F  
Sbjct: 1028 LVDYDTLAGGDKFGNIWLLRCPEHVSKLADEENSESKLIHEKPFLNSTPHKLDLMAHFFT 1087

Query: 189  GETVTSLQRATLIPGGSEALLYQQLVGLLAFY 284
             +  TSLQ+  L+ G  E LL+  L+G +  +
Sbjct: 1088 NDIPTSLQKVQLVEGAREVLLWTGLLGTVGVF 1119


>SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 257

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -1

Query: 531 SNVFKFFCTSAGVRSKSPAMAFCFPGSRELNCSHR-SPSIT 412
           S   K  CT +G R   P+  F F  S +LNC  R SP  T
Sbjct: 56  SEKIKIACTVSGPR---PSKTFAFRSSAKLNCEFRLSPFST 93


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = -3

Query: 199 TVSPT*KLT-----TTSPFCEAPLSKPLSQSALFPVGSSSTSS 86
           TV+PT   T     TTS    + +S PLS S+ +P   SST S
Sbjct: 706 TVAPTSTFTSSGFNTTSGLPTSSVSTPLSNSSAYPSSGSSTFS 748


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +2

Query: 296 SREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYY 400
           S++     + + +H+RSE++P+    HL ++SY Y
Sbjct: 143 SKKSSTLSRSISLHLRSESAPISLPIHL-YKSYSY 176


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 524 SSSFFVLQREYVPNHL 477
           S  F++L REY+PN L
Sbjct: 331 SLDFYLLDREYIPNEL 346


>SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 266

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -3

Query: 253 YSSASEPPGINVALCREVTVSPT*KLTT-TSPFCEAPLSKPLSQSALFPV 107
           Y ++++PPG+N  +    TV+   +LT+  S F   P S     + L P+
Sbjct: 28  YKNSNKPPGLNPEIYAPFTVNKITELTSDASLFSLVPQSPSEHLTTLEPI 77


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 5/81 (6%)
 Frame = +3

Query: 84  SDDVDEDPTGNKALWDRGLLNGASQKGDVVVNFHVGETVTSLQRATLIPGGSE-----AL 248
           ++ ++ED       W RG L G+   G V +  +         +  ++   SE     A 
Sbjct: 380 TNTLEEDTDDQSIKWIRGALIGSGSFGQVYLGMNASSGELMAVKQVILDSVSESKDRHAK 439

Query: 249 LYQQLVGLLAFYYRLHQEKIM 311
           L   L G +A    L  E I+
Sbjct: 440 LLDALAGEIALLQELSHEHIV 460


>SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 131 QRFT*WCFTKGRCCGQFS-CW*NCNLSTESNI 223
           Q F  W FT+GR   +F+  W N +LS  ++I
Sbjct: 294 QHFVVWAFTQGRFYDEFTKHWINRSLSWVNSI 325


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -3

Query: 142 SKPLSQSALFPVGSSSTSSLTDCGNRIIATLPNL 41
           S PLS  ++ PV ++ +SSL++  N ++ T  +L
Sbjct: 151 SLPLSGCSIGPVRTNHSSSLSNSSNSLLQTESSL 184


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +1

Query: 112 ETKHFGTEVYLMVLHKREMLWSIFMLVK 195
           E++   ++ YL+  H+R++L+S  M VK
Sbjct: 419 ESEVLNSQAYLLFYHERQILYSDEMTVK 446


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,514,840
Number of Sequences: 5004
Number of extensions: 52700
Number of successful extensions: 143
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)