Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00575
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043699-3|AAB97566.1| 1220|Caenorhabditis elegans Temporarily a...   120   6e-28
Z35604-7|CAA84682.1|  304|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z80214-5|CAJ76929.1|  916|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z80214-4|CAB02263.1|  982|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z49910-8|CAA90123.2|  408|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical...    28   4.6  
AF067618-3|AAC19196.1|  430|Caenorhabditis elegans Proteasome re...    28   4.6  
AF026207-2|AAK71372.1|  233|Caenorhabditis elegans Hypothetical ...    28   6.1  
S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.       27   8.1  
M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protei...    27   8.1  
AF038623-7|AAB94157.1|  338|Caenorhabditis elegans Seven tm rece...    27   8.1  
AC006608-2|AAF39756.1| 1147|Caenorhabditis elegans Transformer :...    27   8.1  
AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer :...    27   8.1  

>AF043699-3|AAB97566.1| 1220|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 203 protein.
          Length = 1220

 Score =  120 bits (290), Expect = 6e-28
 Identities = 50/89 (56%), Positives = 75/89 (84%)
 Frame = +3

Query: 9    ILDYDTIAVSDKFGNVAIMRLPQSVSDDVDEDPTGNKALWDRGLLNGASQKGDVVVNFHV 188
            +LDY T+AV+DKFGN+A++RLP+ V++DV +DPT +K++WDRG LNGASQK ++V NF +
Sbjct: 1041 VLDYHTVAVADKFGNLAVVRLPERVNEDVQDDPTVSKSVWDRGWLNGASQKVELVSNFFI 1100

Query: 189  GETVTSLQRATLIPGGSEALLYQQLVGLL 275
            G+T+TSLQ+ +L+PG +EAL+Y  + G +
Sbjct: 1101 GDTITSLQKTSLMPGANEALVYTTIGGAI 1129



 Score =  113 bits (271), Expect = 1e-25
 Identities = 48/86 (55%), Positives = 68/86 (79%)
 Frame = +2

Query: 266  GSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVIDGDLCEQFN 445
            G++G L+ F S+++ DFF +LEMH+RSE  PLCGRDHL++RSYY P K+VIDGD+CEQF+
Sbjct: 1127 GAIGCLVSFMSKDEVDFFTNLEMHVRSEYPPLCGRDHLAYRSYYAPCKSVIDGDICEQFS 1186

Query: 446  SLDPGKQKAIAGDLERTPAEVQKNLK 523
             +D  KQK +A +L +T +E+ K L+
Sbjct: 1187 LMDTQKQKDVAEELGKTVSEISKKLE 1212


>Z35604-7|CAA84682.1|  304|Caenorhabditis elegans Hypothetical
           protein ZK1058.9 protein.
          Length = 304

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 323 HLEMHMRSENSPLCGRDHLSFRSYYYPVKNVIDG 424
           H  +H RSEN P    D    R++ YP+   + G
Sbjct: 162 HTNIHYRSENEPFRKYDVYGLRTWSYPIYKYVYG 195


>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical protein
            F15D4.7 protein.
          Length = 2268

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 40   TNLVMWL*CGYHNL*VMMLMKILLETKHFGTEVY 141
            T+++ W  C +H+  +++  K L+ET  FG  V+
Sbjct: 974  TDIIPWFKCSHHSNQIILPSKRLIETTPFGILVH 1007


>Z80214-5|CAJ76929.1|  916|Caenorhabditis elegans Hypothetical
           protein C27D8.3b protein.
          Length = 916

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 27/101 (26%), Positives = 42/101 (41%)
 Frame = +3

Query: 6   SILDYDTIAVSDKFGNVAIMRLPQSVSDDVDEDPTGNKALWDRGLLNGASQKGDVVVNFH 185
           S L +DT  V  +F   ++ R    V     +     K LW+  L++G       VVN  
Sbjct: 560 SHLRFDTDTVQMRF---SVWRGILEVLQIFQDPKAAVKVLWEHYLMHGFLDT-QAVVNLL 615

Query: 186 VGETVTSLQRATLIPGGSEALLYQQLVGLLAFYYRLHQEKI 308
           +      + R T I GGS  + Y+ L G +     L  +K+
Sbjct: 616 MPRHNCMVIRLTYILGGSVCVSYRNLCGEIIHLEPLELKKL 656


>Z80214-4|CAB02263.1|  982|Caenorhabditis elegans Hypothetical
           protein C27D8.3a protein.
          Length = 982

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 27/101 (26%), Positives = 42/101 (41%)
 Frame = +3

Query: 6   SILDYDTIAVSDKFGNVAIMRLPQSVSDDVDEDPTGNKALWDRGLLNGASQKGDVVVNFH 185
           S L +DT  V  +F   ++ R    V     +     K LW+  L++G       VVN  
Sbjct: 626 SHLRFDTDTVQMRF---SVWRGILEVLQIFQDPKAAVKVLWEHYLMHGFLDT-QAVVNLL 681

Query: 186 VGETVTSLQRATLIPGGSEALLYQQLVGLLAFYYRLHQEKI 308
           +      + R T I GGS  + Y+ L G +     L  +K+
Sbjct: 682 MPRHNCMVIRLTYILGGSVCVSYRNLCGEIIHLEPLELKKL 722


>Z49910-8|CAA90123.2|  408|Caenorhabditis elegans Hypothetical
           protein F44G4.7 protein.
          Length = 408

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = -3

Query: 226 INVALCREVTVSPT*KLTTTSPFCEAPLSKPLSQSALFPVGSSSTSSL 83
           IN A+ R  T  PT  +   +P+C+ PL K L  S + P   +S SSL
Sbjct: 357 INPAILRART--PTPPIVKLAPWCKGPLRK-LDDSGVIPDLDASGSSL 401


>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
            protein F15D4.7 protein.
          Length = 2268

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 40   TNLVMWL*CGYHNL*VMMLMKILLETKHFGTEVY 141
            T+++ W  C +H+  +++  K L+ET  FG  V+
Sbjct: 974  TDIIPWFKCSHHSNQIILPSKRLIETTPFGILVH 1007


>AF067618-3|AAC19196.1|  430|Caenorhabditis elegans Proteasome
           regulatory particle,atpase-like protein 5 protein.
          Length = 430

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +2

Query: 389 SYYYPVKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPAEVQKNLKTFELDMR 544
           +Y+ PV  ++D D  +  + +   K   +   LE+ PAE    +K  E+D R
Sbjct: 122 TYFLPVVGLVDPDELKPGDLVGVNKDSYLI--LEKLPAEYDSRVKAMEVDER 171


>AF026207-2|AAK71372.1|  233|Caenorhabditis elegans Hypothetical
           protein H42K12.2 protein.
          Length = 233

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 510 CTSAGVRSKSPAMAFCFPGSRELNCSHRSPSI 415
           C S+     S ++  CFPG R  N   R+ ++
Sbjct: 154 CVSSAASGPSSSLILCFPGGRRCNTHARTEAL 185


>S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.
          Length = 1475

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 175 TTTSPFCEAPLSKPLSQSALFPVGSSSTSSLT 80
           TT S FC   LS+ + +   FP+ S+  S +T
Sbjct: 519 TTRSSFCTERLSRCIQREKRFPINSNFASLIT 550


>M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protein
           protein.
          Length = 1475

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 175 TTTSPFCEAPLSKPLSQSALFPVGSSSTSSLT 80
           TT S FC   LS+ + +   FP+ S+  S +T
Sbjct: 519 TTRSSFCTERLSRCIQREKRFPINSNFASLIT 550


>AF038623-7|AAB94157.1|  338|Caenorhabditis elegans Seven tm
           receptor protein 161 protein.
          Length = 338

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 599 YFIFILIEKLIN*FIIN*NAYLVRMSSSFFVLQRE 495
           YF F+LI  +   F +N  A  +     FF L+RE
Sbjct: 88  YFAFLLIVSMCGCFGVNITAIAINFIYRFFALERE 122


>AC006608-2|AAF39756.1| 1147|Caenorhabditis elegans Transformer : xx
           animals transformedinto males protein 2, isoform b
           protein.
          Length = 1147

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 175 TTTSPFCEAPLSKPLSQSALFPVGSSSTSSLT 80
           TT S FC   LS+ + +   FP+ S+  S +T
Sbjct: 519 TTRSSFCTERLSRCIQREKRFPINSNFASLIT 550


>AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer : xx
           animals transformedinto males protein 2, isoform a
           protein.
          Length = 1475

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 175 TTTSPFCEAPLSKPLSQSALFPVGSSSTSSLT 80
           TT S FC   LS+ + +   FP+ S+  S +T
Sbjct: 519 TTRSSFCTERLSRCIQREKRFPINSNFASLIT 550


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,756,418
Number of Sequences: 27780
Number of extensions: 290370
Number of successful extensions: 639
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)