Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00575
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   5.5  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   5.5  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   9.6  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 459 ENKKPSQVIWNVLPLKYKKT*RHS 530
           E +K  +++++VLP+      RHS
Sbjct: 376 EKQKTDRLLYSVLPISVANELRHS 399


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 459 ENKKPSQVIWNVLPLKYKKT*RHS 530
           E +K  +++++VLP+      RHS
Sbjct: 376 EKQKTDRLLYSVLPISVANELRHS 399


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 383 FRSYYYPVKNVIDGDLCE 436
           FR    PV++ I G +CE
Sbjct: 397 FRILTMPVRDAIAGTICE 414


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,586
Number of Sequences: 438
Number of extensions: 3355
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)