Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00575
         (618 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55220.1 68416.m06133 splicing factor, putative contains CPSF...   124   6e-29
At3g55200.1 68416.m06131 splicing factor, putative contains CPSF...   124   6e-29
At1g19680.1 68414.m02453 expressed protein                             29   2.5  
At1g65080.1 68414.m07378 OXA1 family protein contains Pfam PF020...    28   5.7  
At1g35240.1 68414.m04370 transcriptional factor B3 family protei...    27   7.5  
At1g31500.2 68414.m03858 endonuclease/exonuclease/phosphatase fa...    27   10.0 
At1g31500.1 68414.m03857 endonuclease/exonuclease/phosphatase fa...    27   10.0 
At1g31250.1 68414.m03825 proline-rich family protein contains pr...    27   10.0 

>At3g55220.1 68416.m06133 splicing factor, putative contains CPSF A
            subunit region (PF03178); contains weak WD-40 repeat
            (PF00400); similar to Splicing factor 3B subunit 3
            (SF3b130)/spliceosomal protein/Splicing factor 3B subunit
            3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
            EMBL:HSAJ1443_1
          Length = 1214

 Score =  124 bits (298), Expect = 6e-29
 Identities = 55/86 (63%), Positives = 68/86 (79%)
 Frame = +2

Query: 266  GSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVIDGDLCEQFN 445
            GS+G L  FTSR+D DFF HLEMHMR E  PLCGRDH+++RS Y+PVK+VIDGDLCEQF 
Sbjct: 1122 GSIGALHAFTSRDDVDFFSHLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFP 1181

Query: 446  SLDPGKQKAIAGDLERTPAEVQKNLK 523
            +L    Q+ IA +L+RTPAE+ K L+
Sbjct: 1182 TLPMDLQRKIADELDRTPAEILKKLE 1207



 Score =  113 bits (273), Expect = 7e-26
 Identities = 47/86 (54%), Positives = 69/86 (80%)
 Frame = +3

Query: 12   LDYDTIAVSDKFGNVAIMRLPQSVSDDVDEDPTGNKALWDRGLLNGASQKGDVVVNFHVG 191
            +D+DT+A +DKFGNV  +RLPQ +S++++EDPTG K  W++G LNGA  K D +V FHVG
Sbjct: 1037 VDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKLNGAPNKVDEIVQFHVG 1096

Query: 192  ETVTSLQRATLIPGGSEALLYQQLVG 269
            + VT LQ+A++IPGGSE+++Y  ++G
Sbjct: 1097 DVVTCLQKASMIPGGSESIMYGTVMG 1122


>At3g55200.1 68416.m06131 splicing factor, putative contains CPSF A
            subunit region (PF03178); contains weak WD-40 repeat
            (PF00400); similar to Splicing factor 3B subunit 3
            (SF3b130)/spliceosomal protein/Splicing factor 3B subunit
            3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
            EMBL:HSAJ1443_1
          Length = 1214

 Score =  124 bits (298), Expect = 6e-29
 Identities = 55/86 (63%), Positives = 68/86 (79%)
 Frame = +2

Query: 266  GSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVIDGDLCEQFN 445
            GS+G L  FTSR+D DFF HLEMHMR E  PLCGRDH+++RS Y+PVK+VIDGDLCEQF 
Sbjct: 1122 GSIGALHAFTSRDDVDFFSHLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFP 1181

Query: 446  SLDPGKQKAIAGDLERTPAEVQKNLK 523
            +L    Q+ IA +L+RTPAE+ K L+
Sbjct: 1182 TLPMDLQRKIADELDRTPAEILKKLE 1207



 Score =  113 bits (273), Expect = 7e-26
 Identities = 47/86 (54%), Positives = 69/86 (80%)
 Frame = +3

Query: 12   LDYDTIAVSDKFGNVAIMRLPQSVSDDVDEDPTGNKALWDRGLLNGASQKGDVVVNFHVG 191
            +D+DT+A +DKFGNV  +RLPQ +S++++EDPTG K  W++G LNGA  K D +V FHVG
Sbjct: 1037 VDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKLNGAPNKVDEIVQFHVG 1096

Query: 192  ETVTSLQRATLIPGGSEALLYQQLVG 269
            + VT LQ+A++IPGGSE+++Y  ++G
Sbjct: 1097 DVVTCLQKASMIPGGSESIMYGTVMG 1122


>At1g19680.1 68414.m02453 expressed protein
          Length = 444

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = -3

Query: 217 ALCREVTVSPT*KLTTTSPFCEAPLSKPLSQSALFPVGSSSTSSLTDCGNRII 59
           A C E   + T K   T P C       LS+ AL        +S   C NR++
Sbjct: 305 AACLETMTNETEKYDPTCPICTETQVTKLSRKALKAEAELKATSYKRCKNRVV 357


>At1g65080.1 68414.m07378 OXA1 family protein contains Pfam PF02096:
           60Kd inner membrane protein; similar to AtOXA1
           (GI:6624207) [Arabidopsis thaliana]
          Length = 525

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 166 SPFCEAPLSKPLSQSALFPVGSSSTSSLTDCGNRIIATL 50
           SP C +PL + LS    FP+GS       D    ++A +
Sbjct: 46  SPTCFSPLHRLLSSGPEFPIGSQEIIPTDDSSLPVLAVV 84


>At1g35240.1 68414.m04370 transcriptional factor B3 family protein /
           auxin-responsive factor AUX/IAA-related contains Pfam
           profiles: PF02309 AUX/IAA family, PF02362: B3 DNA
           binding domain
          Length = 615

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = +2

Query: 356 PLCGRDHLSFRSYYYPVKNV--IDGDLCEQFNSLDP 457
           PLC    L    YY+P  N+  +D    E+ N L P
Sbjct: 35  PLCDIPKLGENVYYFPQGNIELVDASTREELNELQP 70


>At1g31500.2 68414.m03858 endonuclease/exonuclease/phosphatase
           family protein low similarity to SP|P31384
           Glucose-repressible alcohol dehydrogenase
           transcriptional effector (Carbon catabolite repressor
           protein 4) {Saccharomyces cerevisiae}; contains Pfam
           profile PF03372: Endonuclease/Exonuclease/phosphatase
           family
          Length = 383

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 3   TSILDYDTIAVSDKFGNVAIMRLPQSVSDDV 95
           T+ LDY  I+ SD    V+I++LP+  S DV
Sbjct: 328 TNTLDYIFISPSDFIKPVSILQLPEPDSPDV 358


>At1g31500.1 68414.m03857 endonuclease/exonuclease/phosphatase
           family protein low similarity to SP|P31384
           Glucose-repressible alcohol dehydrogenase
           transcriptional effector (Carbon catabolite repressor
           protein 4) {Saccharomyces cerevisiae}; contains Pfam
           profile PF03372: Endonuclease/Exonuclease/phosphatase
           family
          Length = 388

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 3   TSILDYDTIAVSDKFGNVAIMRLPQSVSDDV 95
           T+ LDY  I+ SD    V+I++LP+  S DV
Sbjct: 333 TNTLDYIFISPSDFIKPVSILQLPEPDSPDV 363


>At1g31250.1 68414.m03825 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965;
           similar to prolin rich protein GB:S44189 GI:433706 from
           [Zea mays]
          Length = 165

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = -3

Query: 262 NC*YSSASEPPGINVALCREVTVSPT*KLTTTSPFCEAPLSKPLSQSALFPVGSSSTSS 86
           NC Y S++ P   N +L      SP+ KLT         L+ P +  ++ P G++  +S
Sbjct: 36  NC-YGSSAPPVPPNASLSIPPNSSPSVKLTPPYASPSVKLTPPYASPSVRPAGTTPNAS 93


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,782,632
Number of Sequences: 28952
Number of extensions: 266275
Number of successful extensions: 626
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)