Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00574
         (732 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20015| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_55692| Best HMM Match : HR1 (HMM E-Value=7.3)                       28   6.8  
SB_38068| Best HMM Match : UreE_N (HMM E-Value=0.46)                   28   9.0  
SB_27997| Best HMM Match : OTU (HMM E-Value=1.6)                       28   9.0  
SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.0  

>SB_20015| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 593

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 421 PAPQQRVIGKHDDDDDC-KLSYLRKKIKKIFYLFMVKGTKQ 540
           P P  R    HDD++DC     L+K   KIF  F V G K+
Sbjct: 80  PFPYPRPWPTHDDNNDCIPTPSLKKFAVKIFAKFEVHGIKE 120


>SB_55692| Best HMM Match : HR1 (HMM E-Value=7.3)
          Length = 233

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 159 KYCKRNSGTIKYLVLYNRYHHS 224
           K CKR S   + L+ YNRY HS
Sbjct: 138 KSCKRLSNLQRVLLRYNRYRHS 159


>SB_38068| Best HMM Match : UreE_N (HMM E-Value=0.46)
          Length = 413

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = -3

Query: 361 GSELVKYR----ISRLMVRPIIGMNVANAVIIYLN*NHCFNHYIKTAKR 227
           GS +VK +    +SR + R I+G++V    +I+   + C N  I+TAKR
Sbjct: 104 GSSVVKEKEAGDVSRFLNR-ILGLSVEKQNLIFSYFSECLNATIETAKR 151


>SB_27997| Best HMM Match : OTU (HMM E-Value=1.6)
          Length = 226

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 10  PQDCFAVCHLILHFGDY 60
           P +CF +CH +LH  D+
Sbjct: 112 PVNCFIICHCLLHSSDH 128


>SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1117

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 132 TIIYDSLSLKYCKRNSGTIKYLVLYNRYHHSIL 230
           TI YD++   + + NS T +Y++ Y+  H   L
Sbjct: 874 TIQYDTVHQVHARYNSHTARYMIQYDTVHRDTL 906


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,161,834
Number of Sequences: 59808
Number of extensions: 340015
Number of successful extensions: 1021
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)