Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00574
         (732 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g26760.1 68414.m03258 SET domain-containing protein contains ...    32   0.34 
At1g33750.1 68414.m04172 terpene synthase/cyclase family protein...    29   4.2  

>At1g26760.1 68414.m03258 SET domain-containing protein contains
           Pfam profiles PF00856: SET domain, PF00515:
           tetratricopeptide repeat (TPR) domain
          Length = 967

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -2

Query: 404 SICIAIASKITLKSWIRTSEXXXXXXNGEANYWDECGKCCHYLLEL 267
           SI  A+ SK  +K W R  +       GE   WD  G  C YL+E+
Sbjct: 356 SIGFAV-SKDGIKDWKRVQDEEAVIAVGEGGAWDNEGVGCPYLIEM 400


>At1g33750.1 68414.m04172 terpene synthase/cyclase family protein
           similar to DELTA-CADINENE SYNTHASE ISOZYME A GB:Q43714
           from [Gossypium arboreum]
          Length = 603

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = -3

Query: 274 LN*NHCFNHYIKTAKRML*WYLLYNTRYLM--VPEFLLQYFKDKLSYIIVPNNNIGSLIK 101
           LN N C  HY++  K +  W+   +  Y +  + + LL+ F   ++  + P+ ++G +I 
Sbjct: 286 LNFNFCQLHYVRELKTLTKWWKDIDLPYKLPYIRDRLLETFIGVMAVYLEPHYSLGRIIA 345

Query: 100 *AIS 89
             +S
Sbjct: 346 TKVS 349


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,541,784
Number of Sequences: 28952
Number of extensions: 245676
Number of successful extensions: 863
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)