Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00573
(627 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 2.2
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 2.2
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha... 26 3.9
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 26 5.1
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po... 26 5.1
SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Ma... 26 5.1
SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 5.1
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 25 6.8
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha... 25 6.8
SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz... 25 9.0
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.1 bits (57), Expect = 2.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 166 DNDKSSDYNFDGSLKNINKKGNNDNFDEDEK 258
DND +D + D N N NN N D+D+K
Sbjct: 528 DNDNDNDNDRDS---NNNNNNNNTNTDDDDK 555
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 27.1 bits (57), Expect = 2.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 166 DNDKSSDYNFDGSLKNINKKGNNDNFDEDEK 258
DND +D + D N N NN N D+D+K
Sbjct: 528 DNDNDNDNDRDS---NNNNNNNNTNTDDDDK 555
>SPCC16C4.08c |skb15||Shk1 kinase binding protein
15|Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 26.2 bits (55), Expect = 3.9
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -3
Query: 424 DLVRSAGGVLAPDPRLFVRTAEPFCFFARSPFVIVESKGID 302
DLVR GG + P + E F S FVI+ +GID
Sbjct: 148 DLVRGKGGKVLPLSTI----PESILFLNESSFVIMSRRGID 184
>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1690
Score = 25.8 bits (54), Expect = 5.1
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +1
Query: 157 MASDNDKSSDYNFDGSLKNINKKGNNDNFDEDEKKLSKRHLLEKAVDIYQYLLTRL*RMA 336
+A D + S D D K KK +D FD++EK L + + A D + LL+
Sbjct: 1387 LADDTEDSEDEE-DEEPKR--KKSKSDRFDDEEKDLDE--IPSTAADFERQLLSSPNSSL 1441
Query: 337 IW 342
+W
Sbjct: 1442 LW 1443
>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 25.8 bits (54), Expect = 5.1
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -3
Query: 346 FARSPFVIVESKGIDKCRPPFPTGAVLKAFSHLHQSYHCF 227
+ RSP + SKG+ R P +LKA + Q CF
Sbjct: 183 YLRSPSTGILSKGVSSTRSPVSNTKLLKA-EFIKQVISCF 221
>SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 25.8 bits (54), Expect = 5.1
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = +1
Query: 157 MASDNDKSSDYN---FDGSLKNINKKGNNDNFDEDEKKLSKRHLLEKAVDIYQYLLTRL 324
M+S N+ S+ Y FD S NND+F D+ LEK ++ ++ L
Sbjct: 232 MSSLNELSASYKPIVFDSSQHKTQGTDNNDSFYHDDTNCIHLSRLEKIRELLTFVQLEL 290
>SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 168
Score = 25.8 bits (54), Expect = 5.1
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +2
Query: 431 LGLRKTVQTVEMETEKEIRKIRSSF*TLERKISVRANRDELV--QKGILLPXSPVTPVPE 604
L LRK+ +V +ETE+ +KI R + A+ ++L+ +LP P +P
Sbjct: 12 LKLRKSFDSVVLETEEIEQKIAEISEVYRRILLENAHLNDLLIDMNSTVLPTPPASPPGS 71
Query: 605 ANEELSP 625
E P
Sbjct: 72 PYWEAKP 78
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 25.4 bits (53), Expect = 6.8
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Frame = +1
Query: 160 ASDNDKSSDYNFDGSLK----NINKKGNNDNFDEDEKKLSK--RHLLEKAVDIYQYLL 315
+SDN+ SD+ S K N ++ + +EDE + K +H + + Y+YLL
Sbjct: 45 SSDNEVESDHESKSSSKKLKENAKEEEGGEEEEEDEYVVEKVLKHRMARKGGGYEYLL 102
>SPAPJ696.02 |||actin cortical patch component Lsb4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 172 DKSSDYNFDGSLKNINKKGNNDNFDEDEKKLSKRHLLEK 288
D+SS Y+ G N+ +D+ DED+ S+ L +
Sbjct: 256 DRSSSYSRRGDSYRSNRSRAHDDDDEDDYSFSRSKSLSR 294
>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 526
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 166 DNDKSSDYNFDGSLKNINKKGNNDNFDEDEKKLSKRHL 279
DND S D FD ++ +N+ ND+ D+ + + S R +
Sbjct: 52 DND-SDDSTFDINVNQLNELDLNDSSDQLDSRPSLRRV 88
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,176,403
Number of Sequences: 5004
Number of extensions: 39203
Number of successful extensions: 168
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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