Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00573
(627 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0710 - 26492093-26493460 33 0.19
12_01_0684 + 5828947-5829012,5831123-5832103,5832200-5832326,583... 29 3.0
03_03_0215 - 15492934-15493023,15493449-15493547,15493578-154936... 29 3.0
07_03_0638 + 20196216-20196650,20196810-20196930,20197072-201971... 29 4.0
05_02_0135 - 6965294-6965875 29 4.0
03_05_0694 + 26844075-26844217,26844417-26844489,26844577-268447... 28 5.3
03_06_0682 - 35516081-35518303 28 7.0
03_06_0680 - 35497868-35497884,35498058-35501961 28 7.0
03_06_0678 - 35480711-35484658 27 9.2
>11_06_0710 - 26492093-26493460
Length = 455
Score = 33.1 bits (72), Expect = 0.19
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +1
Query: 175 KSSDYNFDGSLKNINKKGNNDNFDEDEKKLSKR 273
KSSD + D + K KK N + DED+KK SK+
Sbjct: 147 KSSDDDDDDAEKKSKKKSKNSDDDEDDKKKSKK 179
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +1
Query: 175 KSSDYNFDGSLKNINKKGNNDNFDEDEKKLSKR 273
K+SD + D K+ KK N + DED+KK SK+
Sbjct: 165 KNSDDDEDDKKKS-KKKPKNPDDDEDDKKKSKK 196
>12_01_0684 + 5828947-5829012,5831123-5832103,5832200-5832326,
5832623-5832705,5832752-5832917,5833337-5833399,
5833624-5833733,5834227-5834276,5834528-5834664,
5835180-5835281,5835871-5835988,5836575-5836627,
5836710-5836813,5836910-5836972,5837375-5837503,
5837508-5837605,5838446-5838500,5839260-5839311,
5839996-5840113,5841906-5842035,5842156-5842437
Length = 1028
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -3
Query: 352 CFFARSPFVIVESKGIDKCRPPF-PTGAV 269
CFFA +V+ E K ID CR + P G++
Sbjct: 960 CFFAAMKYVVGEGKSIDFCRANWLPGGSI 988
>03_03_0215 -
15492934-15493023,15493449-15493547,15493578-15493634,
15493635-15493902,15494019-15494086
Length = 193
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 331 FVIVESKGIDKCRPPFPTGAVLKAFSHLHQSYHCFPSY 218
F + K + + P+P A+++AFS LH PS+
Sbjct: 120 FFVTREKNVCEKAAPWPLAAMIRAFSMLHNRMLADPSF 157
>07_03_0638 +
20196216-20196650,20196810-20196930,20197072-20197168,
20197284-20197323,20197648-20197731,20198966-20199130
Length = 313
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +2
Query: 86 VFMFEINHKCDIKNYVNYRDTIFKWLVTMIKVRITT 193
++MF++ +C + N +++ + KW T I + I T
Sbjct: 205 LYMFDLTSRCTLTNVIDWYERARKWNKTAIPILIGT 240
>05_02_0135 - 6965294-6965875
Length = 193
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 163 SDNDKSSDYNFDGSLKNINKKGNNDNFDEDEKKLSKR 273
SD+D S+++ DG + + NND+ + K +SK+
Sbjct: 139 SDHDSDSNHDIDGDDNDDDDDDNNDDEHKTNKTMSKK 175
>03_05_0694 +
26844075-26844217,26844417-26844489,26844577-26844781,
26845516-26845655,26846858-26846983,26847455-26847622,
26848486-26848650,26849433-26849594,26849682-26849761,
26849975-26850038
Length = 441
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +1
Query: 172 DKSSDYNFDGSLKNINKKGNNDNFDEDEKKLSKRHLLEKAVDIYQY 309
DK D+N K +K D DE +KK + EKAV Y
Sbjct: 286 DKQDDHNKKAQFKLRGEKAIKDKHDEQDKKAQLKLQGEKAVKRKDY 331
>03_06_0682 - 35516081-35518303
Length = 740
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +3
Query: 333 GDLAKKQNGSAVRTNSLGSGARTPPAERTKSKFSAFGR 446
GD+AKK +GS + +LGS RT + TK ++ A R
Sbjct: 363 GDIAKKCSGSPLAATALGSTLRT---KTTKKEWEAILR 397
>03_06_0680 - 35497868-35497884,35498058-35501961
Length = 1306
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 333 GDLAKKQNGSAVRTNSLGSGARTPPAER 416
GD+AK+ +GS + +LGS RT E+
Sbjct: 360 GDIAKRCSGSPLAATALGSTLRTKTTEK 387
>03_06_0678 - 35480711-35484658
Length = 1315
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 333 GDLAKKQNGSAVRTNSLGSGARTPPAER 416
GD+AKK +GS + +LGS RT ++
Sbjct: 366 GDIAKKCSGSPLAATALGSTLRTKTTKK 393
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,704,288
Number of Sequences: 37544
Number of extensions: 253013
Number of successful extensions: 841
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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