Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00573
(627 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50209| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_20267| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_13469| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_35263| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_56223| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_23116| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_20262| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_39408| Best HMM Match : Cadherin (HMM E-Value=0) 29 3.1
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_2467| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_57501| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_55933| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_12106| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_38776| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0013) 28 5.4
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 5.4
SB_19815| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0013) 28 5.4
SB_49457| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_45168| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_32196| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31) 27 9.4
SB_11711| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-10) 27 9.4
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_50209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 473
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +1
Query: 163 SDNDKSSDYNFDGSLKNINKKGNNDNFDEDEKKLSK 270
++N+ ++D FD S++N N GN N ++DEK SK
Sbjct: 376 TENNSNND-GFDNSIRNDNNAGNKSN-NKDEKNNSK 409
>SB_20267| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 415
Score = 30.7 bits (66), Expect = 1.0
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 166 DNDKSSDYNFDGSLKNINKKGNNDNFDEDE 255
+ND + +YN +G+ N + NNDN+D ++
Sbjct: 272 NNDNNDNYNNNGNNDNNDNYDNNDNYDNND 301
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +1
Query: 145 YNF*MASDNDKSSDYNFDGSLKNINK--KGNNDNFDEDE 255
YN+ +ND ++ N D + N N GNNDN+D ++
Sbjct: 212 YNYDNNDNNDNDNNDNNDKNDNNDNNDNNGNNDNYDNND 250
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +1
Query: 148 NF*MASDNDKSSDYNFDGSLKNINKKGNNDNFDEDE 255
N+ +ND + +Y+ +G+ N + NNDN+D ++
Sbjct: 332 NYDNNDNNDNNDNYDNNGNNDNNDNYDNNDNYDNND 367
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 163 SDNDKSSDYNFDGSLKNINKKGNNDNFDED 252
+DND + +Y+ + + N + NNDN+D +
Sbjct: 173 NDNDNNDNYDDNDNNDNNDNYDNNDNYDNN 202
>SB_13469| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2429
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 340 RSPFVIVESKGIDKCRPPFPTGAVLKAFSHLHQ 242
+S F I + KG DKC+PP T + K +H Q
Sbjct: 349 KSYFKIQDPKGTDKCKPPKITLELPKELNHAQQ 381
>SB_35263| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 163 SDNDKSSDYNFDGSLKNINKKGNNDNFDEDEKKLS 267
SDN+ +SD N NI+ N+DN + D +S
Sbjct: 182 SDNNNTSDNNNTSDNNNISDNNNSDNNNSDNNNIS 216
>SB_56223| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1719
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 166 DNDKSSDYNFDGSLKNINKKGNNDNFDEDEK 258
D+D DYN DG ++ +K +D E+E+
Sbjct: 266 DDDNGDDYNDDGEMEGQDKDSGDDYIPEEEE 296
>SB_23116| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 163 SDNDKSSDYNFDGSLKNINKKGNNDNFDEDE 255
S N +++YN D + N K NN+N D+D+
Sbjct: 105 SSNYDNNNYNNDNDNNDNNNKNNNNNNDDDD 135
>SB_20262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 166 DNDKSSDYNFDGSLKNINKKGNNDNFDEDE 255
DND +D N D + N N GNNDN D ++
Sbjct: 34 DNDNDNDNNNDNNDSNDNN-GNNDNNDNND 62
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +1
Query: 148 NF*MASDNDKS-SDYNFDGSLKNINKKGNNDNFDEDE 255
N+ DND + ++YN+D N + GNNDN+D ++
Sbjct: 147 NYDNYDDNDNNDNNYNYD----NNDNNGNNDNYDNND 179
>SB_39408| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2389
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +1
Query: 142 RYNF*MASDNDKSSDYNFDGSLKNINKKGNNDNFDEDEKKLSKR 273
RYN + N+K+++ N+ G +N N N+N D+KKL +R
Sbjct: 455 RYN---RNSNNKNNNINYKGQKRNDNNSFGNNN---DKKKLKQR 492
>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3287
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 163 SDNDKSSDYNFDGSLKNINKKGNNDNFDEDEKKLSK 270
+DND +D + D N N N+++ D D KL K
Sbjct: 3252 NDNDNDNDNDNDNDNDNDNDNDNDNDNDNDSYKLKK 3287
>SB_2467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = +1
Query: 163 SDNDKSSDYNFDGSLKNINKKGNNDNFDEDEKKLSKRHLLEKAVDIYQYLLTRL 324
+DND +D + D N N NN+N + D S L+ + ++ + + ++
Sbjct: 89 NDNDNDNDNDNDNDNDNDNDNDNNNNNNNDNNNNSIDDALKILIIMFSFFIVQI 142
>SB_57501| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 166 DNDKSSDYNFDGSLKNINKKGNNDNFDEDEKKLSKRH 276
D+D D + D + + N GN+D+ D+D+ LS H
Sbjct: 103 DDDSDDDDDNDSNDDDDNGDGNDDDDDDDDTVLSPYH 139
>SB_55933| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 489
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +1
Query: 166 DND-KSSDYNFDGSLKNINKKGNNDNFDED 252
DND + DY DG + + GN+D++++D
Sbjct: 432 DNDGNNDDYKIDGDDDDYDNDGNDDDYNDD 461
>SB_12106| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 163 SDNDKSSDYNFDGSLKNINKKGNNDNFDED 252
+DND + + D + KN N K NND+ +E+
Sbjct: 88 NDNDTNDENINDDNEKNTNDKNNNDDSNEN 117
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Frame = +1
Query: 166 DNDKSSDYNFDGSLKNINK-KGNNDNFDED-----EKKLSKRH 276
DNDK++ N D KN +K K ND+FD++ +KK +RH
Sbjct: 121 DNDKNT--NDDNDKKNDDKDKNTNDDFDDNTTDDIDKKHQRRH 161
>SB_38776| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0013)
Length = 122
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 440 RKTVQTVEMETEKEIRKIRSSF*TLERKIS 529
RK +Q V E+E+EI ++S LER+++
Sbjct: 73 RKKLQAVRSESEREITNLKSKVAQLERRLA 102
>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 4303
Score = 28.3 bits (60), Expect = 5.4
Identities = 25/90 (27%), Positives = 42/90 (46%)
Frame = -3
Query: 433 ENLDLVRSAGGVLAPDPRLFVRTAEPFCFFARSPFVIVESKGIDKCRPPFPTGAVLKAFS 254
E+L +++SA + P+P + RTA SP +E K +KC + + + +K
Sbjct: 3695 EDLPVLQSAV-IRPPEPEI-QRTAPV------SPQTPIEYK-CNKCSNSYVSFSEMK--K 3743
Query: 253 HLHQSYHCFPSY*CSSMNHQSCNPNFYHCH 164
H+ +HC PS C + C P + H
Sbjct: 3744 HMSTVHHCRPSKTCELCSKMFCRPEYVAKH 3773
Score = 27.9 bits (59), Expect = 7.1
Identities = 25/90 (27%), Positives = 42/90 (46%)
Frame = -3
Query: 433 ENLDLVRSAGGVLAPDPRLFVRTAEPFCFFARSPFVIVESKGIDKCRPPFPTGAVLKAFS 254
E+L +++SA + P+P + RTA SP +E K +KCR + + + +K
Sbjct: 3275 EDLPVLQSAV-IRTPEPEI-QRTAPV------SPQTPIEYK-CNKCRNSYVSFSEMK--K 3323
Query: 253 HLHQSYHCFPSY*CSSMNHQSCNPNFYHCH 164
H+ ++C PS C C P + H
Sbjct: 3324 HMSTVHNCRPSKTCELCGKMFCTPEYVAKH 3353
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = -3
Query: 340 RSPFVIVESKGIDKCRPPFPTGAVLKAFSHLHQSYHCFPSY*CSSMNHQSCNPNFYHCH 164
RSP +E K +KC + + + +K H+ ++C PS C + C P + H
Sbjct: 2588 RSPQTPIEYK-CNKCSNSYVSFSEMK--KHMRTVHNCRPSKTCELCSKMFCRPEYVAKH 2643
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = -3
Query: 340 RSPFVIVESKGIDKCRPPFPTGAVLKAFSHLHQSYHCFPSY*CSSMNHQSCNPNFYHCH 164
RSP +E K +KC + + + +K H+ ++C PS C + C P + H
Sbjct: 2786 RSPQTPIEYK-CNKCSNSYVSFSEMK--KHMRTVHNCRPSKTCELCGKKFCTPEYVAKH 2841
>SB_19815| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0013)
Length = 122
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 440 RKTVQTVEMETEKEIRKIRSSF*TLERKIS 529
RK +Q V E+E+EI ++S LER+++
Sbjct: 73 RKKLQAVRSESEREITNLKSKVAQLERRLA 102
>SB_49457| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = +1
Query: 169 NDKSSDYNFDGSLKNINK---KGNNDNFDEDEKKLSK 270
ND+SS DG+L N + +G+N++ DE++ + SK
Sbjct: 763 NDESSHVVVDGALMNNGRNTDEGSNESNDEEQSEASK 799
>SB_45168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -1
Query: 414 VPRAASSHQTQGYSFAPPNHSVSLPDRHSS*SSQKVLI 301
+PR ++ H T GY P+ + + PD H++ S+ K +I
Sbjct: 344 IPRHSNPHYTHGYVPIFPDSNGNPPDDHTNNSTPKDVI 381
>SB_32196| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1333
Score = 27.9 bits (59), Expect = 7.1
Identities = 9/31 (29%), Positives = 21/31 (67%)
Frame = +1
Query: 163 SDNDKSSDYNFDGSLKNINKKGNNDNFDEDE 255
++N+ +++ N + + N N NND++D+D+
Sbjct: 273 NNNNNNNNNNNNNNNNNNNNNNNNDDYDDDD 303
>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
Length = 2122
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 437 LRKTVQTVEMETEKEIRKIRSSF*TLERKISVRANRDELVQK 562
L KTV+ EKEI+K+RS L+R+ S + + ++K
Sbjct: 1228 LLKTVKNENEIQEKEIKKLRSEVLELQREASGAQGKCDTLEK 1269
>SB_11711| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-10)
Length = 948
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 184 DYNFDGSLKNINKKGNNDN 240
DY+FDG+ N N NN+N
Sbjct: 17 DYDFDGNNNNNNNSNNNNN 35
>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2202
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 163 SDNDKSSDYNFDGSLKNINKKGNNDNFDEDEKKLSKRH 276
+D K D++ D N + G +DN D+D +RH
Sbjct: 2058 NDEYKGPDFHDDALSSNDDVVGYHDNIDDDPSDSHRRH 2095
>SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 705
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 163 SDNDKSSDYNFDGSLKNINKKGNNDN 240
++ND +SD N + + N N NNDN
Sbjct: 596 NNNDNNSDNNNNNNNNNNNNNNNNDN 621
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,005,068
Number of Sequences: 59808
Number of extensions: 292035
Number of successful extensions: 1580
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1515
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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