Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00573
         (627 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical p...    31   0.67 
Z77133-7|CAB00865.2|  735|Caenorhabditis elegans Hypothetical pr...    28   4.8  
U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AL008868-4|CAO82021.1|  735|Caenorhabditis elegans Hypothetical ...    28   4.8  
AC024824-1|AAK85503.1|  679|Caenorhabditis elegans Hypothetical ...    28   4.8  
Z82277-1|CAB05248.1|  648|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U53154-11|AAC25848.1|  390|Caenorhabditis elegans Hypothetical p...    28   6.3  
U12921-1|AAB60256.1|  648|Caenorhabditis elegans sex determinati...    28   6.3  

>U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical
            protein R11G1.1 protein.
          Length = 1656

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = +2

Query: 509  TLERKISVRANRDELVQKGILLPXSPVTPVPEANE 613
            TLE+ +   A   E+ ++GI LP SP TP+P A E
Sbjct: 1168 TLEKSLEA-ALLIEMAKRGIELPLSPKTPIPIATE 1201


>Z77133-7|CAB00865.2|  735|Caenorhabditis elegans Hypothetical
           protein K03A11.1 protein.
          Length = 735

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 175 KSSDYNFDGSLKNINKKGNNDNFDEDEKKLSKRHLLEK 288
           KSSD NFDGS  N       +  DE  + +    L E+
Sbjct: 663 KSSDDNFDGSFSNFEYDNKENEHDEANESIDFGFLNEE 700


>U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical
           protein F59A6.5 protein.
          Length = 1286

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = +2

Query: 437 LRKTVQTVE---METEKEIRKIRSSF*TLERKISVRANRDELVQKGI 568
           L++T+Q  +    ETE E+   RS    LE+++S +AN   +V K +
Sbjct: 133 LQETIQRAQDDKKETETELESSRSRLHVLEKELSAKANDIFMVTKDL 179


>AL008868-4|CAO82021.1|  735|Caenorhabditis elegans Hypothetical
           protein K03A11.1 protein.
          Length = 735

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 175 KSSDYNFDGSLKNINKKGNNDNFDEDEKKLSKRHLLEK 288
           KSSD NFDGS  N       +  DE  + +    L E+
Sbjct: 663 KSSDDNFDGSFSNFEYDNKENEHDEANESIDFGFLNEE 700


>AC024824-1|AAK85503.1|  679|Caenorhabditis elegans Hypothetical
           protein Y55B1BR.3 protein.
          Length = 679

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +1

Query: 163 SDNDKSSDYNFDGS--LKNINKKGNNDNFDEDEKKLSKRHLLEK 288
           SD+D  SD +FD     KN  K+   D+  +D+ ++ +R    K
Sbjct: 219 SDSDSDSDSDFDKKKWKKNKAKRSKRDDSSDDDSEMERRRKKSK 262


>Z82277-1|CAB05248.1|  648|Caenorhabditis elegans Hypothetical
           protein LLC1.1 protein.
          Length = 648

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 445 LPKAENLDLVRSAGGVLAPDPRLFVRTAEP 356
           L + ++ D+V    G L PDP LFV  A P
Sbjct: 43  LEQRQSSDIVWKRPGELHPDPHLFVEGASP 72


>U53154-11|AAC25848.1|  390|Caenorhabditis elegans Hypothetical
           protein C33G8.2 protein.
          Length = 390

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 166 DNDKSSDYNFDGSLKNINKKGNNDNFDEDEKKLSKR 273
           D  K  D   D   K+  KK ++D  DED+KK  K+
Sbjct: 353 DKKKKKDDVDDDMKKDKKKKEDDDKEDEDDKKKDKK 388


>U12921-1|AAB60256.1|  648|Caenorhabditis elegans sex determination
           protein.
          Length = 648

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 445 LPKAENLDLVRSAGGVLAPDPRLFVRTAEP 356
           L + ++ D+V    G L PDP LFV  A P
Sbjct: 43  LEQRQSSDIVWKRPGELHPDPHLFVEGASP 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,029,682
Number of Sequences: 27780
Number of extensions: 225951
Number of successful extensions: 795
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)