Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00573
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.46 
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   2.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   4.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   5.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.6  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   7.4  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   9.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -1

Query: 423 TWSVPRAASSHQTQGYSFAPPNHSVSLPDRHSS*SSQKVLINVDRLFQ 280
           T S  R  +S+ T   SF PP  + SL +RH+    +K+++   R F+
Sbjct: 617 TSSASRENTSNTTSMESFKPPTLTESLLNRHNE-DMEKLMMLKHREFR 663


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 169 NDKSSDYNFDGSLKNINKKGNNDNFDEDEKKL 264
           N+ +  YN++ +  N N    N+N++ + KKL
Sbjct: 325 NNNNYKYNYNNN--NYNNNNYNNNYNNNCKKL 354


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 421 LVRSAGGVLAPDPRLFVRTA 362
           +VR+  G+   DP LFV T+
Sbjct: 389 MVRTCNGLELRDPSLFVETS 408


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 148 CISIVNVIFNITFMIYLEHKNFIT 77
           CIS+V +I  I F+    ++NFI+
Sbjct: 404 CISLVYIIMLIIFIPRNIYENFIS 427


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +3

Query: 309  PFDSTMTNGDLAKKQNGSAVRTNSLGSGARTPPAER 416
            P+D   + G + ++  GSA      GS    PP  R
Sbjct: 1830 PYDHYGSRGSVGRRSVGSARNIPVSGSPEPPPPPPR 1865


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 283 PTGAVLKAFSHLHQS 239
           P GAVL  F+HL+ +
Sbjct: 467 PRGAVLARFTHLNHA 481


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 386 VWCEDAARGTDQVQVLGLRKTVQTVE 463
           VW   A RG +Q   + +  TVQ+ +
Sbjct: 92  VWVAGAQRGNEQRCTVTMHGTVQSYD 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,465
Number of Sequences: 438
Number of extensions: 3082
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)