Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00573
         (627 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55550.1 68414.m06358 kinesin motor protein-related Similar t...    30   1.4  
At1g05320.1 68414.m00539 myosin-related similar to non-muscle my...    30   1.4  
At3g04750.1 68416.m00511 pentatricopeptide (PPR) repeat-containi...    29   3.3  
At2g37560.2 68415.m04607 origin recognition complex subunit 2 (O...    28   5.8  
At2g37560.1 68415.m04606 origin recognition complex subunit 2 (O...    28   5.8  
At5g67580.2 68418.m08522 myb family transcription factor contain...    27   7.7  
At5g67580.1 68418.m08521 myb family transcription factor contain...    27   7.7  
At1g20110.1 68414.m02516 zinc finger (FYVE type) family protein ...    27   7.7  

>At1g55550.1 68414.m06358 kinesin motor protein-related Similar to
           Kinesin proteins; Contains kinesin motor domain protein
           motif and kinesin heavy chain signature motif
          Length = 887

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 18/62 (29%), Positives = 35/62 (56%)
 Frame = +2

Query: 428 VLGLRKTVQTVEMETEKEIRKIRSSF*TLERKISVRANRDELVQKGILLPXSPVTPVPEA 607
           ++ L+K ++ +E E E  +RK+R+   TLE K++ + +  E  +K ++     VTP    
Sbjct: 429 MMNLQKMMEKIEQEREMSLRKMRNLNETLE-KLTGKPHVIEEEEKDVVREVIHVTPKKPR 487

Query: 608 NE 613
           N+
Sbjct: 488 NK 489


>At1g05320.1 68414.m00539 myosin-related similar to non-muscle
           myosin II heavy chain (GI:19879404) [Loligo pealei];
           ESTs gb|AA042402,gb|ATTS1380 come from this gene
          Length = 828

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +1

Query: 175 KSSDYNFDGSLKNINKKGNNDNFDEDEKKLSKRHL--LEKAVDIY 303
           +  D  FDG    + K+G N  +D+D+ + +++ L  LE A+ ++
Sbjct: 27  EEEDTIFDGGFVKVEKEGINKKYDDDDDEKAEKQLKSLEDALQLH 71


>At3g04750.1 68416.m00511 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 661

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 172 HCH*PFKNCISIVNVIFNITFMIYLEHKNF 83
           HCH     C+S+ N ++N     Y+E  NF
Sbjct: 153 HCHIIVSGCLSLGNYLWNSLVKFYMELGNF 182


>At2g37560.2 68415.m04607 origin recognition complex subunit 2
           (ORC2) identical to origin recognition complex subunit 2
           (ORC2) SP:Q38899 from [Arabidopsis thaliana]
          Length = 345

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 437 LRKTVQTVEMETEKEIRKIRSSF*TLERK 523
           LR+T  T+EM+  KEI ++ S + T+  K
Sbjct: 46  LRETASTIEMKHSKEISELMSDYKTMYSK 74


>At2g37560.1 68415.m04606 origin recognition complex subunit 2
           (ORC2) identical to origin recognition complex subunit 2
           (ORC2) SP:Q38899 from [Arabidopsis thaliana]
          Length = 363

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 437 LRKTVQTVEMETEKEIRKIRSSF*TLERK 523
           LR+T  T+EM+  KEI ++ S + T+  K
Sbjct: 46  LRETASTIEMKHSKEISELMSDYKTMYSK 74


>At5g67580.2 68418.m08522 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 299

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +3

Query: 255 EKAFKTAPVGKGGRHLSIPFDSTMTNGDLAKKQNGSAVRTNSLGSGAR 398
           E+ FKT P  K  RH+++      +NG L K ++     +N + +GAR
Sbjct: 152 EENFKTPPNMK--RHVAVRLKHLSSNGTLVKIKHKYRFSSNFIPAGAR 197


>At5g67580.1 68418.m08521 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 299

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +3

Query: 255 EKAFKTAPVGKGGRHLSIPFDSTMTNGDLAKKQNGSAVRTNSLGSGAR 398
           E+ FKT P  K  RH+++      +NG L K ++     +N + +GAR
Sbjct: 152 EENFKTPPNMK--RHVAVRLKHLSSNGTLVKIKHKYRFSSNFIPAGAR 197


>At1g20110.1 68414.m02516 zinc finger (FYVE type) family protein
           contains Pfam profile: PF01363 FYVE zinc finger
          Length = 601

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 393 HQTQGYSFAPPNHSVSLPD 337
           HQT GYS APP  S   P+
Sbjct: 153 HQTSGYSSAPPPSSAPAPN 171


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,268,024
Number of Sequences: 28952
Number of extensions: 209316
Number of successful extensions: 651
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)