Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00571
(736 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex det... 24 1.7
DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex det... 24 1.7
DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex det... 24 1.7
DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex det... 24 1.7
DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex det... 24 1.7
DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex det... 24 1.7
DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex det... 24 1.7
DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex det... 24 1.7
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 22 5.2
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 22 5.2
DQ435328-1|ABD92643.1| 143|Apis mellifera OBP11 protein. 22 6.9
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 22 6.9
>DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 23.8 bits (49), Expect = 1.7
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +3
Query: 555 VMASSVSIYRFVKKTNYENL*NYTNFEK 638
+++S + Y + NY N NY N++K
Sbjct: 81 IVSSLSNNYNYSNYNNYNNNNNYNNYKK 108
>DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 23.8 bits (49), Expect = 1.7
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +3
Query: 555 VMASSVSIYRFVKKTNYENL*NYTNFEK 638
+++S + Y + NY N NY N++K
Sbjct: 81 IISSLSNNYNYSNYNNYNNNNNYNNYKK 108
>DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 23.8 bits (49), Expect = 1.7
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +3
Query: 555 VMASSVSIYRFVKKTNYENL*NYTNFEK 638
+++S + Y + NY N NY N++K
Sbjct: 81 IISSLSNNYNYSNYNNYNNNNNYNNYKK 108
>DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 23.8 bits (49), Expect = 1.7
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +3
Query: 555 VMASSVSIYRFVKKTNYENL*NYTNFEK 638
+++S + Y + NY N NY N++K
Sbjct: 81 IISSLSNNYNYSNYNNYNNNNNYNNYKK 108
>DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 23.8 bits (49), Expect = 1.7
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +3
Query: 555 VMASSVSIYRFVKKTNYENL*NYTNFEK 638
+++S + Y + NY N NY N++K
Sbjct: 81 IISSLSNNYNYSNYNNYNNNNNYNNYKK 108
>DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 23.8 bits (49), Expect = 1.7
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +3
Query: 555 VMASSVSIYRFVKKTNYENL*NYTNFEK 638
+++S + Y + NY N NY N++K
Sbjct: 81 IISSLSNNYNYSNYNNYNNNNNYNNYKK 108
>DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 23.8 bits (49), Expect = 1.7
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +3
Query: 555 VMASSVSIYRFVKKTNYENL*NYTNFEK 638
+++S + Y + NY N NY N++K
Sbjct: 81 IISSLSNNYNYSNYNNYNNNNNYNNYKK 108
>DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 23.8 bits (49), Expect = 1.7
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +3
Query: 555 VMASSVSIYRFVKKTNYENL*NYTNFEK 638
+++S + Y + NY N NY N++K
Sbjct: 81 IISSLSNNYNYSNYNNYNNNNNYNNYKK 108
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 22.2 bits (45), Expect = 5.2
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 659 FCWDFFTFFKIRIISKIFVIRFFYKSI 579
FC F FF+ IS F + FY I
Sbjct: 453 FCLLFLMFFECIAISWAFGVNRFYDGI 479
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 22.2 bits (45), Expect = 5.2
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 659 FCWDFFTFFKIRIISKIFVIRFFYKSI 579
FC F FF+ IS F + FY I
Sbjct: 506 FCLLFLMFFECIAISWAFGVNRFYDGI 532
>DQ435328-1|ABD92643.1| 143|Apis mellifera OBP11 protein.
Length = 143
Score = 21.8 bits (44), Expect = 6.9
Identities = 7/19 (36%), Positives = 15/19 (78%)
Frame = -3
Query: 473 LMESFN*LDRQNRKLRVHV 417
++E FN +D++N K+R ++
Sbjct: 75 VLEKFNVMDKKNGKIRYNL 93
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 21.8 bits (44), Expect = 6.9
Identities = 7/22 (31%), Positives = 14/22 (63%)
Frame = -1
Query: 469 WNHLID*IDKIGNYVFMLIVTS 404
W ++ ID++ Y+F L+ T+
Sbjct: 471 WKYVAMVIDRLQLYIFFLVTTA 492
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,278
Number of Sequences: 438
Number of extensions: 3937
Number of successful extensions: 19
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -