Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00570
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.05 |rpc11||DNA-directed RNA polymerase III complex sub...    26   6.5  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    26   6.5  
SPCC613.11c |meu23|B13958-2|DUF1773 family protein 2|Schizosacch...    26   6.5  

>SPAC22A12.05 |rpc11||DNA-directed RNA polymerase III complex
           subunit Rpc11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 543 FDASREVIVQCNKCKCKSNISFFF 472
           F+++++  V C   KC +N ++FF
Sbjct: 59  FESNQQTEVTCENTKCDNNRAYFF 82


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -3

Query: 390 IISCTYKFGFTKDMKRFLLNIKVSNLS*D*NCFYGLMSSF 271
           +IS   KFGF K M  F + IK   LS      +GL S +
Sbjct: 367 LISLVIKFGFGKYMFSFPITIKDLRLSGKLRIRWGLSSDY 406


>SPCC613.11c |meu23|B13958-2|DUF1773 family protein
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 254

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 14/58 (24%), Positives = 28/58 (48%)
 Frame = +3

Query: 540 QSTINVMASSVSIYRFVKKTNYENL*NYTNFEKGKKIPTKIHKNNNMLHESVSLCPLP 713
           Q TIN M  +++  +    T  EN+ N+TN      + +   +N ++   +  + P+P
Sbjct: 125 QRTINTMQGTMNTMQGTMNTMQENMINFTNKVNTLDMRSVRAENRDLRKGAYVISPVP 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,821,963
Number of Sequences: 5004
Number of extensions: 56399
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)