Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00569
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   1.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
 Frame = +2

Query: 434  HSTSRDSLTLR----ATNVPISKLPSSPRVQPRGSD 529
            H  SR S+  R    A N+P+S  P  P   PR  D
Sbjct: 1833 HYGSRGSVGRRSVGSARNIPVSGSPEPPPPPPRNHD 1868


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 135 GYFTCNKAAGAFGITSGTTW 76
           G  + NKA+ AFGI S T +
Sbjct: 480 GTISANKASKAFGIPSSTLY 499


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +2

Query: 413 TNNHRSSHSTSRDSLTLRATNVPISKLPSS 502
           TN   + ++ +   +++  T VPI+ LP+S
Sbjct: 833 TNVTTTINTPTTSVISMSGTTVPITSLPAS 862


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/43 (23%), Positives = 19/43 (44%)
 Frame = +2

Query: 332 TPAKLCPSTWALDLRKRQACTDTCSSCTNNHRSSHSTSRDSLT 460
           +PA+ C ST  +  R  Q         T+N+ ++   +   +T
Sbjct: 746 SPAEQCASTTTITARSPQGSQGLLQCATSNYSTTRWPATSVIT 788


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,055
Number of Sequences: 438
Number of extensions: 4933
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)