Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00568
         (748 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...   133   2e-33
AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...   133   2e-33
AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...   112   2e-27
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    27   0.21 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   3.4  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    23   3.4  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         22   6.0  

>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cognate
           70 protein.
          Length = 196

 Score =  133 bits (321), Expect = 2e-33
 Identities = 61/80 (76%), Positives = 72/80 (90%)
 Frame = +2

Query: 509 NEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVKSTAGDTHLGGED 688
           NEPTAAA+AYGLDK  + ERNVLIFDLGGGTFDVS+LTI+EG +FEVK+TAGDTHLGGED
Sbjct: 2   NEPTAAAIAYGLDKKAEKERNVLIFDLGGGTFDVSLLTIEEG-IFEVKATAGDTHLGGED 60

Query: 689 FDNRLVNHLAEEFKRKYKKD 748
           FDNRLV +  ++FK+K+K D
Sbjct: 61  FDNRLVEYCTQDFKKKHKAD 80


>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock protein
           70 protein.
          Length = 196

 Score =  133 bits (321), Expect = 2e-33
 Identities = 61/80 (76%), Positives = 72/80 (90%)
 Frame = +2

Query: 509 NEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVKSTAGDTHLGGED 688
           NEPTAAA+AYGLDK  + ERNVLIFDLGGGTFDVS+LTI+EG +FEVK+TAGDTHLGGED
Sbjct: 2   NEPTAAAIAYGLDKKAERERNVLIFDLGGGTFDVSLLTIEEG-IFEVKATAGDTHLGGED 60

Query: 689 FDNRLVNHLAEEFKRKYKKD 748
           FDNRLV +  ++FK+K+K D
Sbjct: 61  FDNRLVEYCTQDFKKKHKAD 80


>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score =  112 bits (270), Expect = 2e-27
 Identities = 52/80 (65%), Positives = 68/80 (85%)
 Frame = +2

Query: 509 NEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVKSTAGDTHLGGED 688
           NEPTAAA+AYGLDK    E+N+L++DLGGGTFDVSILTID G +FEV +T+GDTHLGGED
Sbjct: 2   NEPTAAAIAYGLDKK-GAEQNILVYDLGGGTFDVSILTIDNG-VFEVVATSGDTHLGGED 59

Query: 689 FDNRLVNHLAEEFKRKYKKD 748
           FD +++++  +  K+K+KKD
Sbjct: 60  FDQKVMDYFIKMVKQKHKKD 79


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 455 SGHQGRRSHRRPERASHHNEPTAAALA 535
           SG  G   H+    A HH+E +AAA A
Sbjct: 8   SGFYGSHHHQSGSVAGHHHEQSAAAAA 34


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = -3

Query: 434 CRNCDYRIPHCTS-QIGFRRLLH 369
           CR+C Y   +C S +I  RR  H
Sbjct: 289 CRDCSYATKYCHSLKIHLRRYGH 311


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = -3

Query: 434 CRNCDYRIPHCTS-QIGFRRLLH 369
           CR+C Y   +C S +I  RR  H
Sbjct: 47  CRDCSYATKYCHSLKIHLRRYGH 69


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
 Frame = +2

Query: 386 SLSGKYSAGCGSHSSGILQRLPASGH--QGRRSHRRPERASHHNEP 517
           SL  +YS   G H+    +R P +G   Q RR+     R S    P
Sbjct: 198 SLPRQYSQSRGRHNQSRSKRQPKTGREDQTRRNPYYRPRTSRTEPP 243


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,905
Number of Sequences: 336
Number of extensions: 3682
Number of successful extensions: 17
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)