Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00568
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   1.7  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   2.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   4.0  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 13/71 (18%), Positives = 30/71 (42%)
 Frame = +1

Query: 136 RLIGDAAKNXVALNPNNTVFDAKRLIGRKFDDPKIQQDMNTGPSK*STTAANRKYRSSSK 315
           R+   A     A+N       + ++ G +FD+ ++   ++ G       + N   RS   
Sbjct: 269 RIYNAAVSTTKAINQGFRTTKSSKMFGSRFDEERLTLRIHRGRGSVHNGSNNGSPRSPES 328

Query: 316 VRRNDLRQKKL 348
             R  ++++K+
Sbjct: 329 NSRCSVKREKI 339


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 241 QQDMNTGPSK*STTAANRKYRSSSKVRRNDLRQ 339
           QQ  N G +   +T++   Y  +SK+ R++L Q
Sbjct: 125 QQQHNNGYASPMSTSSYDPYSPNSKIGRDELSQ 157


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 454 RWESLKYAGTVTTASRTVLP 395
           +W+S+  +GT T  +RT+ P
Sbjct: 448 QWKSILESGTTTLQTRTMHP 467


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,867
Number of Sequences: 438
Number of extensions: 4656
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)