Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00565
         (716 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36884| Best HMM Match : E2F_TDP (HMM E-Value=1.3e-33)              105   3e-23
SB_1618| Best HMM Match : No HMM Matches (HMM E-Value=.)              103   1e-22
SB_50146| Best HMM Match : No HMM Matches (HMM E-Value=.)              85   4e-17
SB_28642| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)                 73   3e-13
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   7e-08
SB_42016| Best HMM Match : E2F_TDP (HMM E-Value=4.6e-10)               50   1e-06
SB_15242| Best HMM Match : E2F_TDP (HMM E-Value=6e-14)                 43   2e-04
SB_4329| Best HMM Match : E2F_TDP (HMM E-Value=3.6e-10)                38   0.011
SB_57992| Best HMM Match : E2F_TDP (HMM E-Value=1.5e-09)               36   0.025
SB_52307| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_50370| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_28458| Best HMM Match : DUF326 (HMM E-Value=3.4)                    30   2.2  
SB_22270| Best HMM Match : E2F_TDP (HMM E-Value=1.4e-10)               30   2.2  
SB_53398| Best HMM Match : RVT_1 (HMM E-Value=7.8e-12)                 29   3.8  
SB_28258| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_58866| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=0)             28   6.6  
SB_31428| Best HMM Match : Tetraspannin (HMM E-Value=0)                28   6.6  
SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_36884| Best HMM Match : E2F_TDP (HMM E-Value=1.3e-33)
          Length = 77

 Score =  105 bits (253), Expect = 3e-23
 Identities = 52/60 (86%), Positives = 57/60 (95%)
 Frame = +3

Query: 84  RYEKSLGLLTTKFVSLLQKAKDGVLDLKIATNLLAVRQKRRIYDITNVLEGIGLIEKEVK 263
           R+EKSLGLLTTKFVSLLQ+AKDGVLDLK+A + LAVRQKRRIYDITNVLEGIGLIEK+ K
Sbjct: 12  RHEKSLGLLTTKFVSLLQEAKDGVLDLKVAADTLAVRQKRRIYDITNVLEGIGLIEKKSK 71


>SB_1618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1371

 Score =  103 bits (248), Expect = 1e-22
 Identities = 49/67 (73%), Positives = 59/67 (88%)
 Frame = +3

Query: 84  RYEKSLGLLTTKFVSLLQKAKDGVLDLKIATNLLAVRQKRRIYDITNVLEGIGLIEKEVK 263
           R+EKSLGLLTTKFVSLLQ+AKDGVLDLK+A + LAVRQKRRIYDITNVLEGI L+ + ++
Sbjct: 12  RHEKSLGLLTTKFVSLLQEAKDGVLDLKVAADTLAVRQKRRIYDITNVLEGIDLLRRNLR 71

Query: 264 IAFNGEE 284
             F+G +
Sbjct: 72  TVFSGSK 78



 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 22/77 (28%), Positives = 43/77 (55%)
 Frame = +2

Query: 278 RGAGPDYDKNEIGKKVMGLRKQLSYXXXXXXXXXXXXQWIKQSTKNVLDEPDNQDMCFVM 457
           +GAGP  +  EI  K++ L+K+L               W++QS KN+ ++P+N+ + FV 
Sbjct: 78  KGAGPGCNTREISDKLVVLKKELEALDEEERKLDEQRAWVQQSLKNISEDPENEKLAFVT 137

Query: 458 DTEIQQCFQNDLVLVLE 508
             ++ + F+ D +L ++
Sbjct: 138 YDDVCKSFKGDTLLAIQ 154


>SB_50146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 85.4 bits (202), Expect = 4e-17
 Identities = 43/70 (61%), Positives = 56/70 (80%)
 Frame = +3

Query: 54  ILAMTDLKYKRYEKSLGLLTTKFVSLLQKAKDGVLDLKIATNLLAVRQKRRIYDITNVLE 233
           ++A + L+  RY+ SLG+LT KFV L++ ++DGVLDL  A  +L+V QKRRIYDITNVLE
Sbjct: 51  LIATSPLEKTRYDTSLGILTKKFVGLIRASEDGVLDLNHAAEVLSV-QKRRIYDITNVLE 109

Query: 234 GIGLIEKEVK 263
           GIGLIEK+ K
Sbjct: 110 GIGLIEKKSK 119


>SB_28642| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)
          Length = 1750

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 36/65 (55%), Positives = 49/65 (75%), Gaps = 1/65 (1%)
 Frame = +3

Query: 63   MTDLKYK-RYEKSLGLLTTKFVSLLQKAKDGVLDLKIATNLLAVRQKRRIYDITNVLEGI 239
            +T++  K R + SLG+L+ +FV LL+KA DG +DL  A   +AV QKRRIYDI N+LEG+
Sbjct: 1617 LTEILTKTRTDSSLGILSKRFVELLRKAPDGTIDLNYAVEQMAV-QKRRIYDIVNILEGV 1675

Query: 240  GLIEK 254
            GL+EK
Sbjct: 1676 GLVEK 1680


>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1597

 Score = 54.8 bits (126), Expect = 7e-08
 Identities = 27/68 (39%), Positives = 48/68 (70%)
 Frame = +3

Query: 51   LILAMTDLKYKRYEKSLGLLTTKFVSLLQKAKDGVLDLKIATNLLAVRQKRRIYDITNVL 230
            +++   +L  KR E SLGL+++KF++LL+ ++ GV ++  A + L V+ +RR+YD+ N+L
Sbjct: 1019 ILIGAFELFGKRSEASLGLISSKFLALLKDSECGV-EINEAASKLGVK-RRRVYDVVNIL 1076

Query: 231  EGIGLIEK 254
             G GL+ K
Sbjct: 1077 RGAGLVSK 1084


>SB_42016| Best HMM Match : E2F_TDP (HMM E-Value=4.6e-10)
          Length = 363

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 25/55 (45%), Positives = 41/55 (74%)
 Frame = +3

Query: 81  KRYEKSLGLLTTKFVSLLQKAKDGVLDLKIATNLLAVRQKRRIYDITNVLEGIGL 245
           KR E SLGL+++KF++LL+ ++ GV ++  A + L V+ +RR+YD+ N+L G GL
Sbjct: 8   KRSEASLGLISSKFLALLKDSECGV-EINEAASKLGVK-RRRVYDVVNILRGAGL 60


>SB_15242| Best HMM Match : E2F_TDP (HMM E-Value=6e-14)
          Length = 273

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 21/53 (39%), Positives = 34/53 (64%)
 Frame = +3

Query: 96  SLGLLTTKFVSLLQKAKDGVLDLKIATNLLAVRQKRRIYDITNVLEGIGLIEK 254
           +L  LT +FVSLL+ +    + ++ A   L    KRR+YDI N+LEG G++++
Sbjct: 82  TLATLTKEFVSLLKASPKRTISVEKAVERLHAN-KRRVYDIVNILEGAGVVKR 133


>SB_4329| Best HMM Match : E2F_TDP (HMM E-Value=3.6e-10)
          Length = 496

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
 Frame = +3

Query: 96  SLGLLTTKFVSLLQKAKDGVLDLKIATNLLAVRQKRRIYDITNVLEGIGLIEKEV--KIA 269
           SL  +T   V  L+ A    +DL       AV  KRR+YD+ N+LEGI LI++    +++
Sbjct: 72  SLVDITRSLVRELKGAPAQTVDLNELAVRFAV-DKRRLYDVVNILEGISLIKRRAAQRVS 130

Query: 270 FNGEEQ 287
           +N + +
Sbjct: 131 WNSDTE 136


>SB_57992| Best HMM Match : E2F_TDP (HMM E-Value=1.5e-09)
          Length = 79

 Score = 36.3 bits (80), Expect = 0.025
 Identities = 22/53 (41%), Positives = 30/53 (56%)
 Frame = +3

Query: 96  SLGLLTTKFVSLLQKAKDGVLDLKIATNLLAVRQKRRIYDITNVLEGIGLIEK 254
           SL  +T   V  L+ A    +DL       AV  KRR+YD+ N+LEGI LI++
Sbjct: 18  SLVDITRSLVRELKGAPAQTVDLNELAVRFAV-DKRRLYDVVNILEGISLIKR 69


>SB_52307| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 668

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 128 IITESKRRCFGFKNCYQFI 184
           ++ E++R CFGF+ C+ FI
Sbjct: 542 LLKEARRLCFGFRTCFAFI 560


>SB_50370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1059

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 195 QKRRIYDITNVLEGIGLIEKEVK 263
           ++RRIYDI NVLE + +I +  K
Sbjct: 254 ERRRIYDIVNVLESVEVISRFAK 276



 Score = 29.1 bits (62), Expect = 3.8
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 10/57 (17%)
 Frame = +3

Query: 114 TKFVSLLQKAKDGVLDLKIATNLLAVRQK----------RRIYDITNVLEGIGLIEK 254
           TK V  LQ+ K   + L  A N+L    +          RR+YDI N+L  + LI+K
Sbjct: 285 TKLVQTLQRLKTRQVTLDDAANVLIDSSEEGQAKYKTKVRRLYDIANILSSLQLIQK 341


>SB_28458| Best HMM Match : DUF326 (HMM E-Value=3.4)
          Length = 157

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 128 IITESKRRCFGFKNCYQFI 184
           ++ E++R CFGF+ C+ FI
Sbjct: 31  LLKEARRLCFGFRTCFAFI 49


>SB_22270| Best HMM Match : E2F_TDP (HMM E-Value=1.4e-10)
          Length = 113

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 195 QKRRIYDITNVLEGIGLIEKEVK 263
           ++RRIYDI NVLE + +I +  K
Sbjct: 42  ERRRIYDIVNVLESVEVISRFAK 64


>SB_53398| Best HMM Match : RVT_1 (HMM E-Value=7.8e-12)
          Length = 924

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
 Frame = +3

Query: 75  KYKRYEKSLGLLTTKFVSLLQKAKDGVLDL-KIATNLLAVRQ--KRRIYDITNVLEGIGL 245
           KY+ +E +L L   K   L+      +L+L KI  N+  + +     + +  +V EG+GL
Sbjct: 322 KYRCWENALSL-ANKAKPLIGLETCRILELIKIGRNVSEISKGDAEILNEFNDVFEGLGL 380

Query: 246 IEKEVKIAFNGEEQVPI 296
           ++ E  I  + E Q  I
Sbjct: 381 VDGEYHITLSNEAQPTI 397


>SB_28258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1234

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -2

Query: 235 PSKTLVISYILRFCLTANKLVAIFKSKTPSFAFCNNETNLVVSKPKDFSY 86
           PS  L+ SY +        + +  K+   S A+ N   N V+SKP DF++
Sbjct: 656 PSAGLIDSYFVEHETNCGGMASYVKNLAKSEAYSN--ANCVISKPLDFTF 703


>SB_58866| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=0)
          Length = 567

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/59 (25%), Positives = 29/59 (49%)
 Frame = +2

Query: 419 LDEPDNQDMCFVMDTEIQQCFQNDLVLVLEHHWVQIYLLEHNQIRTENQIFYFTLNHQN 595
           L+  D ++   + D+      Q DL+++LEH    + LL        N + YF++N ++
Sbjct: 218 LESKDFENKTRIADSIKDLESQFDLIMLLEHFDESLVLLRRLLCWEPNDVLYFSINQRD 276


>SB_31428| Best HMM Match : Tetraspannin (HMM E-Value=0)
          Length = 280

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 395 IKQSTKNVLDEPDNQDMCFVMDTEIQQC 478
           +KQ  K  LD+P NQD+   M T ++ C
Sbjct: 142 LKQDLKKYLDDPLNQDLIDFMQTLLKCC 169


>SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1259

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -1

Query: 350  SLIVFLIPLPFYQFHFYHNRDLLLSIECY 264
            SLI   + +P+++ + Y NRD L++ +C+
Sbjct: 1232 SLITIALTVPYFRAYSYQNRDFLIA-QCF 1259


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,710,490
Number of Sequences: 59808
Number of extensions: 344890
Number of successful extensions: 772
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)