Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00564
(754 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0865 - 11895257-11895340,11896004-11896069,11896297-118963... 30 1.7
01_01_1022 - 8064032-8064657,8064823-8064893,8065926-8066047,806... 30 2.3
12_01_0919 - 9086879-9087064,9087842-9087923,9088357-9089553,908... 29 3.0
10_08_0514 + 18465474-18465760,18465888-18465978,18466670-184667... 28 6.9
06_01_0993 + 7710016-7710977,7711081-7711316,7711422-7711501,771... 28 6.9
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807... 28 6.9
08_01_0985 - 9960064-9960249,9960327-9960419,9960518-9960578,996... 28 9.2
03_01_0564 - 4176177-4178096 28 9.2
>03_02_0865 -
11895257-11895340,11896004-11896069,11896297-11896355,
11896470-11896557,11897158-11897328,11897406-11897564,
11897653-11897835,11897931-11898012,11898753-11898959,
11899099-11899170,11901948-11902055,11902460-11902506
Length = 441
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = +2
Query: 218 RYKNSVREVVHVTLRQSPISQTPPQCALPAALLKNPSSVPNVQPASTQKPRSNSISFDES 397
R+ V +++ +P P LP+ + P P QP++ KP +S DES
Sbjct: 168 RFYTQVLHLMNKMNLPAPFRMALPTPPLPSQVPAPPPPPPPPQPSAANKPHLTDLSSDES 227
Query: 398 Q 400
+
Sbjct: 228 E 228
>01_01_1022 -
8064032-8064657,8064823-8064893,8065926-8066047,
8066540-8066689,8067153-8067179,8067485-8067552,
8067679-8067874
Length = 419
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +2
Query: 260 RQSPISQTPPQCALPAALLKNPSSVPNVQPASTQKPRSNSISFDESQETFSMDL 421
+Q P Q Q P A P+ P A QKP S+S++E + FS+ +
Sbjct: 8 QQQPQQQQEQQ---PVAAAAVPTPAPPASEAQPQKPTRVSLSYEEISKLFSLPI 58
>12_01_0919 -
9086879-9087064,9087842-9087923,9088357-9089553,
9089598-9089961,9090086-9090188,9090234-9090479
Length = 725
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +2
Query: 260 RQSPISQTPPQCALPAALLKNPSSVPNV 343
+++P+ Q PP+ A+PA ++ P VPNV
Sbjct: 529 KENPVLQVPPEIAVPAVAMEIP--VPNV 554
>10_08_0514 +
18465474-18465760,18465888-18465978,18466670-18466767,
18466852-18466949,18468192-18468321,18468410-18468597,
18470291-18470323,18470627-18471000,18471116-18471294,
18471421-18471532,18471655-18471771,18471875-18472189,
18472405-18472743
Length = 786
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +3
Query: 249 MLPFGNLRFPKRHRNVHFPQPY*RIRLRYPTCSRPAHKNLDLTRYH 386
M P G+L H + + RI +R P C RPA + L R H
Sbjct: 285 MRPDGSLDATSLHGLESWSRLVKRIHVRVPPCHRPAPRRLQQIREH 330
>06_01_0993 +
7710016-7710977,7711081-7711316,7711422-7711501,
7711977-7712072,7712995-7713892,7713983-7714093,
7714657-7714751
Length = 825
Score = 28.3 bits (60), Expect = 6.9
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Frame = +2
Query: 203 LNYS---WRYKNSVREVVH-VTLRQSPISQTPPQCALPAALLKNPSSVPNVQPASTQKPR 370
LNY+ W YK+ H ++++ PIS + + N S P+VQP
Sbjct: 455 LNYNPSEW-YKSCSEVNCHPLSIKLDPISNSRININSASGRASNDSQAPSVQPQKCGPVD 513
Query: 371 SNSISFDESQETFSMDL*ASH*FSEY 448
S +S +E FS+ S FS +
Sbjct: 514 STVVSMALKREQFSIPSMCSESFSSH 539
>04_01_0617 -
8076624-8076971,8077761-8077883,8077965-8078035,
8078108-8078360,8078613-8078768,8078854-8079770,
8079858-8079927,8082310-8082416,8082722-8082755,
8083621-8083940,8084031-8084820,8084890-8085046,
8085647-8086068
Length = 1255
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Frame = +2
Query: 269 PISQTPPQCA----LPAALLKNPSSVPNVQPASTQKPRSN 376
P+ T CA P + + P+S P + PAS++KP+ N
Sbjct: 4 PLRSTVLVCASAAMAPTSAPRLPTSAPPISPASSRKPKPN 43
>08_01_0985 -
9960064-9960249,9960327-9960419,9960518-9960578,
9960667-9960774,9960921-9961106,9961427-9962421,
9962626-9962988,9963085-9963333,9963419-9963574
Length = 798
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2
Query: 260 RQSPISQTPPQCALPAALLKNPSSVPNV 343
+++P+ + PP+ A+P A L+ P VP V
Sbjct: 442 KENPVPEVPPEIAVPEAALETP--VPEV 467
>03_01_0564 - 4176177-4178096
Length = 639
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2
Query: 656 FVDYYRMFYCLC*QIRVL 709
FVDY FYC C + RVL
Sbjct: 112 FVDYLGFFYCRCERFRVL 129
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,713,687
Number of Sequences: 37544
Number of extensions: 445716
Number of successful extensions: 1242
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1242
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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