Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00564
         (754 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g49150.1 68414.m05510 hypothetical protein                          31   0.62 
At1g01400.1 68414.m00055 hypothetical protein                          30   1.4  
At4g00890.1 68417.m00120 proline-rich family protein contains pr...    29   3.3  
At3g62680.1 68416.m07041 proline-rich family protein contains pr...    29   4.4  
At1g62260.1 68414.m07024 pentatricopeptide (PPR) repeat-containi...    28   7.7  

>At1g49150.1 68414.m05510 hypothetical protein
          Length = 148

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = +3

Query: 537 VKLARAKHNKKTCLTGHHFLFRSLVAL*KLNSLTVILLLFLWIIIECFIVCVSKYGF 707
           VK+   K  ++ CL   H L R+L+A+  L SL +++++    ++   +V V+   F
Sbjct: 72  VKIGSVKPRQRACLWMDHLLMRNLIAVLVLLSLVLVVVVVFSSVVVFPVVVVAVKAF 128


>At1g01400.1 68414.m00055 hypothetical protein
          Length = 204

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +3

Query: 159 QMPDVYSSTPGGTIYSTTPGGTRIVYERSFMLPFGNLRFPKRHRNVHFPQP 311
           Q PD+ SS+  GT+ S      R  YE ++ LP  +++  K  RN H   P
Sbjct: 138 QEPDLPSSSGIGTM-SANSHDDRRAYELAYPLPSRDIQSKKELRNAHLKTP 187


>At4g00890.1 68417.m00120 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 431

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +2

Query: 251 VTLRQSPISQTPPQCALPAALLKNPSSVPNVQPASTQKPRSNSIS 385
           V LRQS +S  PP+  +   L ++P   P   P S  +P+S  +S
Sbjct: 20  VQLRQS-VSSQPPRRTVQETLSQSPPQSPLFHPQSPPEPKSLPLS 63


>At3g62680.1 68416.m07041 proline-rich family protein contains
           proline-rich region, INTERPRO:IPR000694
          Length = 313

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = +3

Query: 30  CLVWNFVKLTPRKFLIMSASPIARQATHSQSIPSRRVLITDPAQMPDVYSSTPGGTIYS 206
           CL+ + V +T   +   S+ P+ +   H  ++PS       P   P VY  T    +Y+
Sbjct: 11  CLILSLVTITTADYYSPSSPPVYKSPEHKPTLPS-------PVYTPPVYKPTLSPPVYT 62


>At1g62260.1 68414.m07024 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 656

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 251 VTLRQSPISQTPPQCALPAALLKN 322
           V  R+ P+  + P CAL A L+KN
Sbjct: 188 VLFRKMPVKDSSPLCALVAGLIKN 211


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,537,714
Number of Sequences: 28952
Number of extensions: 346184
Number of successful extensions: 992
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)