Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00563
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...   101   8e-23
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   2.2  
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    26   3.8  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    26   5.1  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   6.7  
SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|ch...    25   8.8  
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    25   8.8  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    25   8.8  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    25   8.8  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   8.8  

>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score =  101 bits (242), Expect = 8e-23
 Identities = 48/90 (53%), Positives = 62/90 (68%)
 Frame = +2

Query: 269  GSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVIDGDLCEQFN 448
            G++GV  PF ++ED  FFQ LE  +R E  PL GRDHL++RSYY PVK VIDGDLCE + 
Sbjct: 1114 GTVGVFTPFINQEDVRFFQQLEFLLRKECPPLAGRDHLAYRSYYAPVKCVIDGDLCEMYY 1173

Query: 449  SLDPGKQKAIAGDLERTPAEYQKNLKTFEL 538
            SL    Q+ IA +L+RT AE  K ++ F +
Sbjct: 1174 SLPHPVQEMIANELDRTIAEVSKKIEDFRV 1203



 Score = 72.5 bits (170), Expect = 4e-14
 Identities = 33/92 (35%), Positives = 55/92 (59%)
 Frame = +3

Query: 12   ILDYDTIAVSDKFGNVAIMRLPQSVSDDVDEDPTGNKALWDRGLLNGASQKGDVVVNFHV 191
            ++DYDT+A  DKFGN+ ++R P+ VS   DE+ + +K + ++  LN    K D++ +F  
Sbjct: 1028 LVDYDTLAGGDKFGNIWLLRCPEHVSKLADEENSESKLIHEKPFLNSTPHKLDLMAHFFT 1087

Query: 192  GETVTSLQRATLIPGGSEALLMQQLVGLLAFY 287
             +  TSLQ+  L+ G  E LL   L+G +  +
Sbjct: 1088 NDIPTSLQKVQLVEGAREVLLWTGLLGTVGVF 1119


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = -2

Query: 202 TVSPT*KLT-----TTSPFCEAPLSKPLSQSALFPVGSSSTSS 89
           TV+PT   T     TTS    + +S PLS S+ +P   SST S
Sbjct: 706 TVAPTSTFTSSGFNTTSGLPTSSVSTPLSNSSAYPSSGSSTFS 748


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 5/81 (6%)
 Frame = +3

Query: 87  SDDVDEDPTGNKALWDRGLLNGASQKGDVVVNFHVGETVTSLQRATLIPGGSE-----AL 251
           ++ ++ED       W RG L G+   G V +  +         +  ++   SE     A 
Sbjct: 380 TNTLEEDTDDQSIKWIRGALIGSGSFGQVYLGMNASSGELMAVKQVILDSVSESKDRHAK 439

Query: 252 LMQQLVGLLAFYYRLHQEKIM 314
           L+  L G +A    L  E I+
Sbjct: 440 LLDALAGEIALLQELSHEHIV 460


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +2

Query: 299 SREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYY 403
           S++     + + +H+RSE++P+    HL ++SY Y
Sbjct: 143 SKKSSTLSRSISLHLRSESAPISLPIHL-YKSYSY 176


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +2

Query: 404 PVKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPAEYQKNL 523
           P+KN  D D C+ F+   P   K     L+    EY K +
Sbjct: 706 PIKNNEDSDSCKAFSQAPPIATKKPPTFLKPNSPEYAKTV 745


>SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 134 QRFT*WCFTKGRCCGQFS-CW*NCNLSTESNI 226
           Q F  W FT+GR   +F+  W N +LS  ++I
Sbjct: 294 QHFVVWAFTQGRFYDEFTKHWINRSLSWVNSI 325


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = +3

Query: 102 EDPTGNKALWDRGLLNGASQKGDVVVNFHVGETVTSLQRATLIPGGSEALLMQQLVGLLA 281
           ED  GNK LWD   +    Q G+   +    + V SL     IP  +    +  L+G+LA
Sbjct: 425 EDAVGNKCLWD---ILACKQAGEFDKSEDFEKIVQSLDTVQAIPRWAS---VNCLLGILA 478


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -2

Query: 145 SKPLSQSALFPVGSSSTSSLTDCGNRIIATLPNL 44
           S PLS  ++ PV ++ +SSL++  N ++ T  +L
Sbjct: 151 SLPLSGCSIGPVRTNHSSSLSNSSNSLLQTESSL 184


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +1

Query: 115 ETKHFGTEVYLMVLHKREMLWSIFMLVK 198
           E++   ++ YL+  H+R++L+S  M VK
Sbjct: 419 ESEVLNSQAYLLFYHERQILYSDEMTVK 446


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = -2

Query: 268 TNCCISSASEPPGINVALCREVT--VSPT*KLTTTSPFCEAPLSKPLSQSALFPVGSSST 95
           T+C  S++  P G + +L   +T  V PT   +T+ P    P S   + +   P+ ++ST
Sbjct: 170 TSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPI--PPTSTSSTDTNSSPLPTTST 227

Query: 94  SSLT 83
           S  T
Sbjct: 228 SCTT 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,518,176
Number of Sequences: 5004
Number of extensions: 52944
Number of successful extensions: 147
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)