Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00563
         (620 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11717| Best HMM Match : No HMM Matches (HMM E-Value=.)              61   1e-20
SB_57383| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   2e-07
SB_31382| Best HMM Match : RVT_1 (HMM E-Value=2.2e-12)                 31   1.00 
SB_3946| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.00 
SB_15424| Best HMM Match : PAN (HMM E-Value=0.00016)                   27   9.3  
SB_5903| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.3  

>SB_11717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 61.3 bits (142), Expect(3) = 1e-20
 Identities = 26/36 (72%), Positives = 29/36 (80%)
 Frame = +3

Query: 66  MRLPQSVSDDVDEDPTGNKALWDRGLLNGASQKGDV 173
           +RLP   SDDVDEDPTG KA WDRGLLNGA QK ++
Sbjct: 56  VRLPSGSSDDVDEDPTGTKAFWDRGLLNGAQQKREM 91



 Score = 46.4 bits (105), Expect(3) = 1e-20
 Identities = 21/35 (60%), Positives = 27/35 (77%)
 Frame = +3

Query: 168 DVVVNFHVGETVTSLQRATLIPGGSEALLMQQLVG 272
           + + N+ VGETV SLQ+ATLIPGGSE+L+   L G
Sbjct: 127 ETMCNYFVGETVLSLQKATLIPGGSESLVFTTLSG 161



 Score = 29.9 bits (64), Expect(3) = 1e-20
 Identities = 11/15 (73%), Positives = 14/15 (93%)
 Frame = +3

Query: 15 LDYDTIAVSDKFGNV 59
          LDYDT+A +DKFGN+
Sbjct: 9  LDYDTLAGADKFGNI 23



 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/16 (68%), Positives = 15/16 (93%)
 Frame = +2

Query: 260 TISGSLGVLLPFTSRE 307
           T+SG +G+L+PFTSRE
Sbjct: 158 TLSGGVGMLVPFTSRE 173


>SB_57383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 22/38 (57%), Positives = 30/38 (78%)
 Frame = +2

Query: 413 NVIDGDLCEQFNSLDPGKQKAIAGDLERTPAEYQKNLK 526
           +V+DGDLCE +NSLD  K++ IA +L+RTPAE  K L+
Sbjct: 1   SVVDGDLCEHYNSLDYSKRRTIAEELDRTPAEVSKKLE 38



 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = +1

Query: 508 ISKKLEDIRTRYA 546
           +SKKLEDIRTRYA
Sbjct: 33  VSKKLEDIRTRYA 45


>SB_31382| Best HMM Match : RVT_1 (HMM E-Value=2.2e-12)
          Length = 1799

 Score = 30.7 bits (66), Expect = 1.00
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 437 EQFNSLDPGKQKAIAGDLERTPAEYQKNLKTFELDMRS 550
           E F +L+PGK+K   G+  RT    Q+    FE +M S
Sbjct: 162 ETFEALEPGKKKDGQGERSRTEETVQEKALLFEQNMSS 199


>SB_3946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 870

 Score = 30.7 bits (66), Expect = 1.00
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 437 EQFNSLDPGKQKAIAGDLERTPAEYQKNLKTFELDMRS 550
           E F +L+PGK+K   G+  RT    Q+    FE +M S
Sbjct: 200 ETFEALEPGKKKDGQGERSRTEETVQEKALLFEQNMSS 237


>SB_15424| Best HMM Match : PAN (HMM E-Value=0.00016)
          Length = 702

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 193 PT*KLTTTSPFCEAPLSKPLSQSALF 116
           PT +    +PF  APLS+P SQS  F
Sbjct: 346 PTFRAPHQTPFFRAPLSEPHSQSPTF 371


>SB_5903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +2

Query: 389 RSYYYPVKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPAEYQKNLKTFELDMR 547
           ++Y+ PV  +++ +     + +   K   +   LE+ PAEY   +K  E+D R
Sbjct: 98  QTYFLPVIGLVEPENLTPGDLVGVNKDSYLI--LEKLPAEYDSRVKAMEVDER 148


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,149,842
Number of Sequences: 59808
Number of extensions: 370605
Number of successful extensions: 812
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)