Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00563
         (620 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043699-3|AAB97566.1| 1220|Caenorhabditis elegans Temporarily a...   117   6e-27
AF067618-3|AAC19196.1|  430|Caenorhabditis elegans Proteasome re...    31   0.50 
Z35604-7|CAA84682.1|  304|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z49910-8|CAA90123.2|  408|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical...    28   4.7  
S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.       27   8.2  
M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protei...    27   8.2  
AC006608-2|AAF39756.1| 1147|Caenorhabditis elegans Transformer :...    27   8.2  
AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer :...    27   8.2  

>AF043699-3|AAB97566.1| 1220|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 203 protein.
          Length = 1220

 Score =  117 bits (282), Expect = 6e-27
 Identities = 49/89 (55%), Positives = 74/89 (83%)
 Frame = +3

Query: 12   ILDYDTIAVSDKFGNVAIMRLPQSVSDDVDEDPTGNKALWDRGLLNGASQKGDVVVNFHV 191
            +LDY T+AV+DKFGN+A++RLP+ V++DV +DPT +K++WDRG LNGASQK ++V NF +
Sbjct: 1041 VLDYHTVAVADKFGNLAVVRLPERVNEDVQDDPTVSKSVWDRGWLNGASQKVELVSNFFI 1100

Query: 192  GETVTSLQRATLIPGGSEALLMQQLVGLL 278
            G+T+TSLQ+ +L+PG +EAL+   + G +
Sbjct: 1101 GDTITSLQKTSLMPGANEALVYTTIGGAI 1129



 Score =  115 bits (276), Expect = 3e-26
 Identities = 50/89 (56%), Positives = 69/89 (77%)
 Frame = +2

Query: 260  TISGSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVIDGDLCE 439
            TI G++G L+ F S+++ DFF +LEMH+RSE  PLCGRDHL++RSYY P K+VIDGD+CE
Sbjct: 1124 TIGGAIGCLVSFMSKDEVDFFTNLEMHVRSEYPPLCGRDHLAYRSYYAPCKSVIDGDICE 1183

Query: 440  QFNSLDPGKQKAIAGDLERTPAEYQKNLK 526
            QF+ +D  KQK +A +L +T +E  K L+
Sbjct: 1184 QFSLMDTQKQKDVAEELGKTVSEISKKLE 1212



 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +1

Query: 508  ISKKLEDIRTRYA 546
            ISKKLEDIRTRYA
Sbjct: 1207 ISKKLEDIRTRYA 1219


>AF067618-3|AAC19196.1|  430|Caenorhabditis elegans Proteasome
           regulatory particle,atpase-like protein 5 protein.
          Length = 430

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +2

Query: 392 SYYYPVKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPAEYQKNLKTFELDMR 547
           +Y+ PV  ++D D  +  + +   K   +   LE+ PAEY   +K  E+D R
Sbjct: 122 TYFLPVVGLVDPDELKPGDLVGVNKDSYLI--LEKLPAEYDSRVKAMEVDER 171


>Z35604-7|CAA84682.1|  304|Caenorhabditis elegans Hypothetical
           protein ZK1058.9 protein.
          Length = 304

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 326 HLEMHMRSENSPLCGRDHLSFRSYYYPVKNVIDG 427
           H  +H RSEN P    D    R++ YP+   + G
Sbjct: 162 HTNIHYRSENEPFRKYDVYGLRTWSYPIYKYVYG 195


>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical protein
            F15D4.7 protein.
          Length = 2268

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 43   TNLVMWL*CGYHNL*VMMLMKILLETKHFGTEVY 144
            T+++ W  C +H+  +++  K L+ET  FG  V+
Sbjct: 974  TDIIPWFKCSHHSNQIILPSKRLIETTPFGILVH 1007


>Z49910-8|CAA90123.2|  408|Caenorhabditis elegans Hypothetical
           protein F44G4.7 protein.
          Length = 408

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = -2

Query: 229 INVALCREVTVSPT*KLTTTSPFCEAPLSKPLSQSALFPVGSSSTSSL 86
           IN A+ R  T  PT  +   +P+C+ PL K L  S + P   +S SSL
Sbjct: 357 INPAILRART--PTPPIVKLAPWCKGPLRK-LDDSGVIPDLDASGSSL 401


>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
            protein F15D4.7 protein.
          Length = 2268

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 43   TNLVMWL*CGYHNL*VMMLMKILLETKHFGTEVY 144
            T+++ W  C +H+  +++  K L+ET  FG  V+
Sbjct: 974  TDIIPWFKCSHHSNQIILPSKRLIETTPFGILVH 1007


>S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.
          Length = 1475

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 178 TTTSPFCEAPLSKPLSQSALFPVGSSSTSSLT 83
           TT S FC   LS+ + +   FP+ S+  S +T
Sbjct: 519 TTRSSFCTERLSRCIQREKRFPINSNFASLIT 550


>M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protein
           protein.
          Length = 1475

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 178 TTTSPFCEAPLSKPLSQSALFPVGSSSTSSLT 83
           TT S FC   LS+ + +   FP+ S+  S +T
Sbjct: 519 TTRSSFCTERLSRCIQREKRFPINSNFASLIT 550


>AC006608-2|AAF39756.1| 1147|Caenorhabditis elegans Transformer : xx
           animals transformedinto males protein 2, isoform b
           protein.
          Length = 1147

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 178 TTTSPFCEAPLSKPLSQSALFPVGSSSTSSLT 83
           TT S FC   LS+ + +   FP+ S+  S +T
Sbjct: 519 TTRSSFCTERLSRCIQREKRFPINSNFASLIT 550


>AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer : xx
           animals transformedinto males protein 2, isoform a
           protein.
          Length = 1475

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 178 TTTSPFCEAPLSKPLSQSALFPVGSSSTSSLT 83
           TT S FC   LS+ + +   FP+ S+  S +T
Sbjct: 519 TTRSSFCTERLSRCIQREKRFPINSNFASLIT 550


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,794,681
Number of Sequences: 27780
Number of extensions: 291207
Number of successful extensions: 633
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)