Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00563
         (620 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55220.1 68416.m06133 splicing factor, putative contains CPSF...   125   3e-29
At3g55200.1 68416.m06131 splicing factor, putative contains CPSF...   125   3e-29
At1g19680.1 68414.m02453 expressed protein                             29   2.5  
At1g16160.1 68414.m01936 protein kinase family protein contains ...    29   3.3  
At1g65080.1 68414.m07378 OXA1 family protein contains Pfam PF020...    28   5.7  
At1g35240.1 68414.m04370 transcriptional factor B3 family protei...    27   7.6  

>At3g55220.1 68416.m06133 splicing factor, putative contains CPSF A
            subunit region (PF03178); contains weak WD-40 repeat
            (PF00400); similar to Splicing factor 3B subunit 3
            (SF3b130)/spliceosomal protein/Splicing factor 3B subunit
            3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
            EMBL:HSAJ1443_1
          Length = 1214

 Score =  125 bits (301), Expect = 3e-29
 Identities = 56/89 (62%), Positives = 69/89 (77%)
 Frame = +2

Query: 260  TISGSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVIDGDLCE 439
            T+ GS+G L  FTSR+D DFF HLEMHMR E  PLCGRDH+++RS Y+PVK+VIDGDLCE
Sbjct: 1119 TVMGSIGALHAFTSRDDVDFFSHLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCE 1178

Query: 440  QFNSLDPGKQKAIAGDLERTPAEYQKNLK 526
            QF +L    Q+ IA +L+RTPAE  K L+
Sbjct: 1179 QFPTLPMDLQRKIADELDRTPAEILKKLE 1207



 Score =  110 bits (265), Expect = 6e-25
 Identities = 46/86 (53%), Positives = 68/86 (79%)
 Frame = +3

Query: 15   LDYDTIAVSDKFGNVAIMRLPQSVSDDVDEDPTGNKALWDRGLLNGASQKGDVVVNFHVG 194
            +D+DT+A +DKFGNV  +RLPQ +S++++EDPTG K  W++G LNGA  K D +V FHVG
Sbjct: 1037 VDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKLNGAPNKVDEIVQFHVG 1096

Query: 195  ETVTSLQRATLIPGGSEALLMQQLVG 272
            + VT LQ+A++IPGGSE+++   ++G
Sbjct: 1097 DVVTCLQKASMIPGGSESIMYGTVMG 1122


>At3g55200.1 68416.m06131 splicing factor, putative contains CPSF A
            subunit region (PF03178); contains weak WD-40 repeat
            (PF00400); similar to Splicing factor 3B subunit 3
            (SF3b130)/spliceosomal protein/Splicing factor 3B subunit
            3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
            EMBL:HSAJ1443_1
          Length = 1214

 Score =  125 bits (301), Expect = 3e-29
 Identities = 56/89 (62%), Positives = 69/89 (77%)
 Frame = +2

Query: 260  TISGSLGVLLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVIDGDLCE 439
            T+ GS+G L  FTSR+D DFF HLEMHMR E  PLCGRDH+++RS Y+PVK+VIDGDLCE
Sbjct: 1119 TVMGSIGALHAFTSRDDVDFFSHLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCE 1178

Query: 440  QFNSLDPGKQKAIAGDLERTPAEYQKNLK 526
            QF +L    Q+ IA +L+RTPAE  K L+
Sbjct: 1179 QFPTLPMDLQRKIADELDRTPAEILKKLE 1207



 Score =  110 bits (265), Expect = 6e-25
 Identities = 46/86 (53%), Positives = 68/86 (79%)
 Frame = +3

Query: 15   LDYDTIAVSDKFGNVAIMRLPQSVSDDVDEDPTGNKALWDRGLLNGASQKGDVVVNFHVG 194
            +D+DT+A +DKFGNV  +RLPQ +S++++EDPTG K  W++G LNGA  K D +V FHVG
Sbjct: 1037 VDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKLNGAPNKVDEIVQFHVG 1096

Query: 195  ETVTSLQRATLIPGGSEALLMQQLVG 272
            + VT LQ+A++IPGGSE+++   ++G
Sbjct: 1097 DVVTCLQKASMIPGGSESIMYGTVMG 1122


>At1g19680.1 68414.m02453 expressed protein
          Length = 444

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = -2

Query: 220 ALCREVTVSPT*KLTTTSPFCEAPLSKPLSQSALFPVGSSSTSSLTDCGNRII 62
           A C E   + T K   T P C       LS+ AL        +S   C NR++
Sbjct: 305 AACLETMTNETEKYDPTCPICTETQVTKLSRKALKAEAELKATSYKRCKNRVV 357


>At1g16160.1 68414.m01936 protein kinase family protein contains
           similarity to wall-associated kinase 4 GI:3355308 from
           [Arabidopsis thaliana]
          Length = 711

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +2

Query: 167 RCCGQFSCW*NCNLSTESNINSWWF*STTNATISGSLGVLLPFTSR 304
           R CG  S      +  +    + W+    NAT SGS G  +PF SR
Sbjct: 24  RTCGGISIPFPFGIGGKDCYLNGWYEVVCNATTSGSSGTTVPFLSR 69


>At1g65080.1 68414.m07378 OXA1 family protein contains Pfam PF02096:
           60Kd inner membrane protein; similar to AtOXA1
           (GI:6624207) [Arabidopsis thaliana]
          Length = 525

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 169 SPFCEAPLSKPLSQSALFPVGSSSTSSLTDCGNRIIATL 53
           SP C +PL + LS    FP+GS       D    ++A +
Sbjct: 46  SPTCFSPLHRLLSSGPEFPIGSQEIIPTDDSSLPVLAVV 84


>At1g35240.1 68414.m04370 transcriptional factor B3 family protein /
           auxin-responsive factor AUX/IAA-related contains Pfam
           profiles: PF02309 AUX/IAA family, PF02362: B3 DNA
           binding domain
          Length = 615

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = +2

Query: 359 PLCGRDHLSFRSYYYPVKNV--IDGDLCEQFNSLDP 460
           PLC    L    YY+P  N+  +D    E+ N L P
Sbjct: 35  PLCDIPKLGENVYYFPQGNIELVDASTREELNELQP 70


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,839,204
Number of Sequences: 28952
Number of extensions: 268613
Number of successful extensions: 650
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)