Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00562
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.10c |||methylthioribose-1-phosphate isomerase |Schizosa...    29   0.65 
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    28   1.1  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    25   8.0  

>SPBC23E6.10c |||methylthioribose-1-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 359

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -2

Query: 262 HCFNHYIKTAKRML*WYLLYNTRYLMVP-EFLLQYFKDKLSYIIVPNNNIGSL 107
           +C N  I+ A+RML   L  N        +FLLQ++KDK    ++ + N GSL
Sbjct: 110 NCRNKIIQEAERMLVKDLEDNHNIGTAGRKFLLQHYKDKDKLTVLTHCNTGSL 162


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = +1

Query: 367  FSVILEAIAIQMEKFDSSPAPQQRV-----IGKHDDDDDCKLSY 483
            + + L+   IQ  KFD+   P++R      + +HD DDD  L+Y
Sbjct: 1327 YKLDLDGKVIQAGKFDNKSTPEEREAFLRSLLEHDGDDDHDLTY 1370


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 391 AIQMEKFDSSPAPQQRVIGKHDDDDDCKLSYLRKKIKKIFY 513
           A+ +E+     A + +VI  H+ +  C L Y   KIK ++Y
Sbjct: 469 ALTLERNSRDFAERSQVIN-HNAETICNLLYQNPKIKTLYY 508


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,603,345
Number of Sequences: 5004
Number of extensions: 48126
Number of successful extensions: 123
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)