Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00562
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0501 + 18153252-18153453,18153973-18154224,18154809-181550...    29   2.7  
10_08_0210 - 15874289-15875663,15878248-15879263                       28   8.4  

>09_04_0501 +
           18153252-18153453,18153973-18154224,18154809-18155015,
           18155198-18157046,18157334-18157381,18158222-18158291,
           18158380-18158475,18158583-18158621,18158714-18158924,
           18159037-18159178,18159275-18159407,18159762-18159878
          Length = 1121

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 469 NHHHHHAFLLPSAGV 425
           +HHHHH + LP AGV
Sbjct: 153 HHHHHHQWTLPFAGV 167


>10_08_0210 - 15874289-15875663,15878248-15879263
          Length = 796

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -3

Query: 237 LPKGCCDGIYYTTQDI*WCLNFS-YNILK 154
           LP GCCD +   T+D+  CL+F+ Y +L+
Sbjct: 259 LPPGCCDILDQKTKDL--CLSFALYKLLR 285


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,507,062
Number of Sequences: 37544
Number of extensions: 270324
Number of successful extensions: 977
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)