Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00562
         (707 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705404-1|AAU12513.1|  406|Anopheles gambiae nicotinic acetylch...    25   2.3  
AY313948-1|AAP76391.1|  424|Anopheles gambiae cytochrome P450 CY...    25   2.3  
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            24   4.1  
AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.         23   7.1  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            23   9.4  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            23   9.4  

>AY705404-1|AAU12513.1|  406|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 9 protein.
          Length = 406

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 319 SPLI*IFYISLVLIQLFSVILEAIAIQMEK 408
           +PLI IF+ + +L+  FS I+  I + + K
Sbjct: 303 TPLIVIFFSNTLLLTAFSTIICVIVMNLSK 332


>AY313948-1|AAP76391.1|  424|Anopheles gambiae cytochrome P450
           CYP6M4 protein.
          Length = 424

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 15/74 (20%), Positives = 30/74 (40%)
 Frame = +2

Query: 212 IPSQHPFGSFYIMIETVILVQVNNDSICHIHPNNWPHH*SRYXXXXXXXXXXXXXXXXXX 391
           +  +HPFG  Y+  + V LV  + + + ++   ++ +   R                   
Sbjct: 6   LKGKHPFGGIYMFTKPVALV-TDLELVKNVFVKDFQYFHDRGTYYNEKHDPLSAHLFNLE 64

Query: 392 QYKWKNLIRALHPS 433
            YKWK+L   + P+
Sbjct: 65  GYKWKSLRNKITPT 78


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 24.2 bits (50), Expect = 4.1
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 469 NHHHHHAFLLPSAGVQGSNQ 410
           +HHHHH    P+ G   +++
Sbjct: 160 HHHHHHHHNAPAGGESSTSE 179


>AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.
          Length = 679

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 469 NHHHHHAFLLPSAGVQGS 416
           +HHHHHA +  +  V+ S
Sbjct: 657 HHHHHHAEVTTAGSVRVS 674


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.0 bits (47), Expect = 9.4
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -2

Query: 202  NTRYLMVPEFLLQYF--KDKLSYIIVPNNNIGSL 107
            NTRY+  PE LL++   ++  + +    N++G L
Sbjct: 1901 NTRYMYTPEGLLRFVVQQNSSNVMYYTYNSVGKL 1934


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.0 bits (47), Expect = 9.4
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -2

Query: 202  NTRYLMVPEFLLQYF--KDKLSYIIVPNNNIGSL 107
            NTRY+  PE LL++   ++  + +    N++G L
Sbjct: 1902 NTRYMYTPEGLLRFVVQQNSSNVMYYTYNSVGKL 1935


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 659,377
Number of Sequences: 2352
Number of extensions: 12345
Number of successful extensions: 47
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 72340815
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)