Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00562
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83120-8|CAE46678.2|  511|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z83120-7|CAB51466.2|  514|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AY523516-1|AAR98638.1|  459|Caenorhabditis elegans acetylcholine...    29   2.5  
AY523515-1|AAR98637.1|  553|Caenorhabditis elegans acetylcholine...    29   2.5  
AF077544-5|AAK39240.1|  398|Caenorhabditis elegans Aspartyl prot...    29   2.5  
Z68227-1|CAA92507.1|  320|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U97403-6|AAB52471.2|  583|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AF039710-10|AAB96693.2|  393|Caenorhabditis elegans Hypothetical...    28   7.5  

>Z83120-8|CAE46678.2|  511|Caenorhabditis elegans Hypothetical
           protein R06A4.10b protein.
          Length = 511

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +1

Query: 322 PLI*IFYISLVLIQLFSVILEAIAIQMEK 408
           PLI +FY S++L+  FS I  ++ I ++K
Sbjct: 261 PLIGLFYTSMILLISFSTICSSVVIYVQK 289


>Z83120-7|CAB51466.2|  514|Caenorhabditis elegans Hypothetical
           protein R06A4.10a protein.
          Length = 514

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +1

Query: 322 PLI*IFYISLVLIQLFSVILEAIAIQMEK 408
           PLI +FY S++L+  FS I  ++ I ++K
Sbjct: 261 PLIGLFYTSMILLISFSTICSSVVIYVQK 289


>AY523516-1|AAR98638.1|  459|Caenorhabditis elegans acetylcholine
           receptor alternativevariant b protein.
          Length = 459

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +1

Query: 322 PLI*IFYISLVLIQLFSVILEAIAIQMEK 408
           PLI +FY S++L+  FS I  ++ I ++K
Sbjct: 206 PLIGLFYTSMILLISFSTICSSVVIYVQK 234


>AY523515-1|AAR98637.1|  553|Caenorhabditis elegans acetylcholine
           receptor 20 (63.9kD) alternative variant a protein.
          Length = 553

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +1

Query: 322 PLI*IFYISLVLIQLFSVILEAIAIQMEK 408
           PLI +FY S++L+  FS I  ++ I ++K
Sbjct: 303 PLIGLFYTSMILLISFSTICSSVVIYVQK 331


>AF077544-5|AAK39240.1|  398|Caenorhabditis elegans Aspartyl
           protease protein 3 protein.
          Length = 398

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +3

Query: 27  CMSSDFAFW*LRRREDLPPAGEIAHLINDPMLLFGTIIYDSL 152
           C +  FAFW  R   D+   GEI     DP    G I ++ L
Sbjct: 208 CKNQLFAFWLSRDANDITNGGEITLCETDPNHYVGNIAWEPL 249


>Z68227-1|CAA92507.1|  320|Caenorhabditis elegans Hypothetical
           protein F49C12.2 protein.
          Length = 320

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 217 WYLLYNTRYLMVPEFLLQYFKD 152
           W LL + RY+MV  FL+ ++KD
Sbjct: 279 WKLLEDGRYVMVKPFLVYFYKD 300


>U97403-6|AAB52471.2|  583|Caenorhabditis elegans Hypothetical
           protein T10E9.3 protein.
          Length = 583

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 23  LLYVI*FCILVITTKGRSSTSR*NCSFDQRSDVVVWNY 136
           L+ +I   + V TT  RS T   +CSF   +  V WNY
Sbjct: 3   LVPIILLFLEVTTTHQRSITQNTDCSFHYSNYSVSWNY 40


>AF039710-10|AAB96693.2|  393|Caenorhabditis elegans Hypothetical
           protein C46E10.9 protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +3

Query: 165 CKRNSGTIKYLVLYNRYHHS 224
           C+++ GT KY ++++ Y+HS
Sbjct: 305 CRKHFGTAKYFLIHHYYYHS 324


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,381,827
Number of Sequences: 27780
Number of extensions: 268795
Number of successful extensions: 859
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)