Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00558
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import com...    29   0.54 
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    29   0.94 
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    28   1.6  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   2.2  
SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|...    27   3.8  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    26   5.0  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    26   5.0  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       26   5.0  
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    26   6.6  
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    26   6.6  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    25   8.8  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    25   8.8  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    25   8.8  

>SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import
           complex anchor subunit Tim18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 186

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 18/51 (35%), Positives = 30/51 (58%)
 Frame = +1

Query: 532 RATSTKRSMTTTSLFCTSSSVLKYAFLCVDTIRQGLLLKSYKVLSTTAIFK 684
           R+ +T    TTTS    ++++L+   L +  +RQG LL + K  STT++ K
Sbjct: 8   RSANTNSPTTTTSFSWFTNNMLQTR-LGLGALRQGRLLFAVKSFSTTSVAK 57


>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +2

Query: 167 LTPTLVKDEPSVKWDAEPG-QYYTLAMTDPVRRPVKNPH-FANGTTGW 304
           LT  ++ ++P+V+WD   G +    A+ + V  P+K P  F++G   W
Sbjct: 115 LTSAILVEKPNVRWDDIAGLENAKEALKETVLLPIKLPQLFSHGRKPW 162


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 489  FEIGTFVARSVSESRLVECELRWLF 415
            F +G FVARS+ +SR++  +   LF
Sbjct: 1375 FALGQFVARSIYDSRIISIQFNPLF 1399


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 21/73 (28%), Positives = 36/73 (49%)
 Frame = +2

Query: 284 ANGTTGWLATSRATR*TPAKLCPSTWALDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTL 463
           A+ T+  L +S AT  + A    ++ +L      + +   SS T++  +S ST+  SL  
Sbjct: 102 ASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLAS 161

Query: 464 RATNVPISKLPSS 502
            +TN   S  P+S
Sbjct: 162 SSTNSTTSATPTS 174


>SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 160

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 14  FQYIRVLTRAMSTVAKSFEASQVVPDV-IPKAPAALLQVKY 133
           FQ + +LT   S  A ++  SQV+P + I  A  AL Q KY
Sbjct: 7   FQSVGILTPCGSAGAIAYITSQVLPAILIGPADVALAQWKY 47


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
 Frame = +2

Query: 380 RQACTDTCSSCTNNHRSSHSTSRD----SLTLRATNVPISKLPSSP 505
           +Q  +D+  S ++NH S+H T  D    S   + ++ P  +LP+SP
Sbjct: 36  KQEKSDSTLSSSSNHDSNHDTPADVDNSSNVNKNSSSPERELPTSP 81


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
 Frame = +1

Query: 226 VLHSGHDRPCAPS-----RKEPTFREWHHWLVGNIQGNEV 330
           +LH G +  CAPS      +E  F+++H+ L      NE+
Sbjct: 739 LLHFGFEIHCAPSEEELIEREEAFKDFHNMLSFKYSANEI 778


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = +1

Query: 331 NSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSKLTFDEPRLTNTSSDKRANF 486
           N+G    QY G   P+ TG  +     + QP +  F +P+ T     +   F
Sbjct: 329 NTGFVQPQYTGFVQPQHTGFVQPQATGFMQPQRTGFVQPQATGFVQPQATGF 380


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = -1

Query: 338 PEFTSLPWMLPTSQWC--HS--RNVGSLRDGAQGRSWPECSTVL 219
           P FT LP ++P+ +W   H+    + S+ +GA+     E S VL
Sbjct: 371 PSFTWLPRLIPSQKWSERHAALMAISSIAEGAEKLMKKELSRVL 414


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 356 YWDKVSPEFTSLPWMLPTSQWCHSRNVGSLRDGAQG 249
           YW  V+P  T L   L  + WC + N G L +  +G
Sbjct: 23  YWPSVAPAATELISKLINAFWCQTLN-GQLVEEDEG 57


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1225

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 89   DVIPKAPAALLQVKYPSGVEVKEGNELTPTLVKDE 193
            D+I K     L++ +P G  +     LTP  VK E
Sbjct: 994  DLISKGATKPLEIAFPDGASILVAFRLTPVPVKLE 1028


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +1

Query: 274 PTFREWHHWLVGNIQGNE--VNSGETLSQ 354
           P+F+E  HW+V ++   E  + SG  LSQ
Sbjct: 139 PSFKETPHWIVKDLSPAESLIPSGPILSQ 167


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +2

Query: 353 STWALDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTLRATNVPISKLPSSPRVQP 517
           S  +  +R   +  +  SS  N + +S     +  T+RA NV  S L +   VQP
Sbjct: 342 SNHSSQIRDHPSTNNNASSYQNFNETSDEGEDNDATIRANNVRSSFLEAPLPVQP 396


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,282,863
Number of Sequences: 5004
Number of extensions: 73313
Number of successful extensions: 193
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)