Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00558
(752 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0155 - 17321982-17322214,17323550-17323590,17323831-173238... 66 4e-11
11_03_0139 + 10632020-10632211,10632876-10632937,10633141-106331... 49 3e-06
06_01_0411 + 2939148-2939354,2939517-2939578,2939712-2939752,294... 48 1e-05
01_01_0723 + 5651593-5651751,5651896-5651957,5652130-5652170,565... 48 1e-05
06_03_0423 - 20624149-20624375,20625581-20625621,20625709-206257... 47 2e-05
12_01_0791 + 7234021-7234221,7234801-7234862,7235441-7235481,723... 46 2e-05
06_01_0409 + 2926072-2926275,2926423-2926484,2926598-2926638,292... 46 2e-05
11_01_0326 - 2435918-2436135,2436232-2436272,2436486-2436547,243... 46 4e-05
01_01_0831 + 6493897-6494100,6494195-6494256,6498047-6498087,649... 46 4e-05
12_01_0332 - 2564541-2564758,2564847-2564887,2565138-2565199,256... 45 7e-05
04_03_0855 - 20328695-20328912,20329128-20329168,20329782-203298... 43 2e-04
02_02_0177 + 7484526-7484723,7484913-7484974,7485606-7485646,748... 43 2e-04
01_05_0474 - 22552599-22552687,22553494-22553631,22553766-225544... 33 0.18
02_02_0730 - 13466806-13466865,13466922-13467029,13467897-134679... 30 1.7
11_06_0690 + 26303733-26306540 30 2.3
05_06_0093 - 25468271-25468320,25468393-25468433,25468592-254686... 30 2.3
05_01_0089 + 589457-589506,589598-589741,589820-589903,590118-59... 30 2.3
07_01_0038 + 305083-305350,305487-305887 29 3.0
01_06_0430 + 29299970-29300031,29300162-29300294,29301057-293011... 29 3.0
06_01_0684 + 5008881-5009504 29 4.0
02_02_0590 - 11894721-11895188,11895684-11895851 29 4.0
11_06_0684 - 26264540-26264661,26264926-26264989,26267168-262673... 29 5.2
11_06_0460 + 23836034-23836083,23836175-23836318,23836397-238364... 29 5.2
11_06_0275 - 21818071-21818192,21818457-21818520,21820699-218209... 29 5.2
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 29 5.2
03_01_0015 + 126611-126639,126718-127099 28 6.9
02_04_0148 - 20198407-20201424 28 6.9
>06_03_0155 -
17321982-17322214,17323550-17323590,17323831-17323892,
17324051-17324245
Length = 176
Score = 65.7 bits (153), Expect = 4e-11
Identities = 37/97 (38%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Frame = +1
Query: 250 PCAPSRKEPTFREWHHWLVGNIQ-GNEVNSGETLSQYVGSGPPEKTGLHRYVFLLYKQPS 426
P APS EPT REW HWLV NI G + + G+ + Y+G PP G+HRYV +L++Q +
Sbjct: 70 PDAPSPSEPTMREWLHWLVVNIPGGTDPSQGDVVVPYMGPRPP--VGIHRYVMVLFQQKA 127
Query: 427 KLTFDEPRLTNTSSDKRANFKIAEFAKSTT*GIRLRA 537
++ P RA F FA G+ + A
Sbjct: 128 RVAAPPP----DEDAARARFSTRAFADRHDLGLPVAA 160
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +2
Query: 77 QVVPDVIPK-APAALLQVKYPSGVEVKEGNELTPTLVKDEPSVKWDAEPGQYYTLAMTDP 253
+V+ DV+ P + V++ + ++ G E+ P++ P+V+ + + L MTDP
Sbjct: 12 RVIGDVVDLFVPTTAMSVRFGTK-DLTNGCEIKPSVAAAPPAVQIAGRVNELFALVMTDP 70
>11_03_0139 +
10632020-10632211,10632876-10632937,10633141-10633181,
10633667-10633883,10634229-10634271
Length = 184
Score = 49.2 bits (112), Expect = 3e-06
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Frame = +1
Query: 208 GRGARTVLHSGHDRPCAPSRKEPTFREWHHWLVGNI-QGNEVNSGETLSQYVGSGPPEKT 384
GR RT+ P APS PT RE+ HW+V +I + + G + Y P
Sbjct: 55 GRDMRTLYTLVMVDPDAPSPSNPTKREYLHWMVTDIPETTDARFGNEIVPY--ESPRPTA 112
Query: 385 GLHRYVFLLYKQPSKLTFDEPRLTNTSSDKRANFKIAEFAK 507
G+HR+VF+L++Q R T + R NF +FA+
Sbjct: 113 GIHRFVFILFRQ-------SVRQTTYAPGWRQNFNTRDFAE 146
>06_01_0411 +
2939148-2939354,2939517-2939578,2939712-2939752,
2941060-2941289
Length = 179
Score = 47.6 bits (108), Expect = 1e-05
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +1
Query: 250 PCAPSRKEPTFREWHHWLVGNIQGNEVNS-GETLSQYVGSGPPEKTGLHRYVFLLYKQPS 426
P APS +P RE+ HWLV +I G S G+ + Y P G+HR VF+L++Q
Sbjct: 74 PDAPSPSDPNLREYLHWLVTDIPGTTAASFGQEVMCY--ESPRPTMGIHRLVFVLFQQLG 131
Query: 427 KLTFDEP 447
+ T P
Sbjct: 132 RQTVYAP 138
>01_01_0723 +
5651593-5651751,5651896-5651957,5652130-5652170,
5654105-5654352
Length = 169
Score = 47.6 bits (108), Expect = 1e-05
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = +1
Query: 250 PCAPSRKEPTFREWHHWLVGNIQG-NEVNSGETLSQYVGSGPPEKTGLHRYVFLLYKQPS 426
P AP+ PT RE+ HWLV +I G + N G + Y P G+HR +L++Q +
Sbjct: 58 PDAPNPSNPTLREYLHWLVTDIPGTTDANYGREVVCY--ESPRPAAGIHRVAVVLFRQMA 115
Query: 427 KLTFDEPRL 453
+ D+P L
Sbjct: 116 RGGVDQPPL 124
Score = 33.1 bits (72), Expect = 0.24
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 56 AKSFEASQVVPDVIPK-APAALLQVKYPSGVEVKEGNELTPTLVKDEPSVKWDAEP 220
A S +V+ DV+ +P L+V Y +GV V G +L P+ V PSV+ +P
Sbjct: 4 ANSLVLGRVIGDVVDLFSPEVTLRVMY-NGVRVVNGEDLRPSAVSARPSVEVMVDP 58
>06_03_0423 -
20624149-20624375,20625581-20625621,20625709-20625770,
20626147-20626338
Length = 173
Score = 46.8 bits (106), Expect = 2e-05
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = +1
Query: 250 PCAPSRKEPTFREWHHWLVGNIQGNEVNS-GETLSQYVGSGPPEKTGLHRYVFLLYKQPS 426
P AP+ PT RE+ HW+V +I + +S G + Y P G+HR V +LY+Q
Sbjct: 69 PDAPNPSNPTLREYLHWMVTDIPSSTDDSFGREIVTY--ESPSPTMGIHRIVMVLYQQLG 126
Query: 427 KLTFDEPRLTNTSSDKRANFKIAEFAK 507
+ T P++ R NF + FA+
Sbjct: 127 RGTVFAPQV-------RQNFNLRSFAR 146
>12_01_0791 +
7234021-7234221,7234801-7234862,7235441-7235481,
7235711-7235940
Length = 177
Score = 46.4 bits (105), Expect = 2e-05
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Frame = +1
Query: 208 GRGARTVLHSGHDRPCAPSRKEPTFREWHHWLVGNI-QGNEVNSGETLSQYVGSGPPEKT 384
GR R + P APS P+ RE+ HWLV ++ +G + + G + Y P
Sbjct: 58 GRDGRALYTLVMVDPDAPSPSNPSKREYLHWLVTDVPEGGDTSKGTEVVAY--ESPRPTA 115
Query: 385 GLHRYVFLLYKQPSKLTFDEPRLTNTSSDKRANFKIAEFA 504
G+HR VF++++Q + + P R+NF +FA
Sbjct: 116 GIHRLVFIVFRQTVRQSIYAP-------GWRSNFNTRDFA 148
Score = 33.9 bits (74), Expect = 0.14
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Frame = +2
Query: 44 MSTVAKSFEASQVVPDVIPKAPAALLQVKYPSGVEVKEGNELTPTLVKDEPSVK-WDAEP 220
MS +V DV+ A+ L + + E+ G+EL P+ V EP+V+
Sbjct: 1 MSMSRDPLVVGSIVGDVVDHFGASALLRLFYNHREMTSGSELRPSQVAGEPAVQITGGRD 60
Query: 221 GQ-YYTLAMTDPVRRPVKNP 277
G+ YTL M DP NP
Sbjct: 61 GRALYTLVMVDPDAPSPSNP 80
>06_01_0409 +
2926072-2926275,2926423-2926484,2926598-2926638,
2927165-2927394
Length = 178
Score = 46.4 bits (105), Expect = 2e-05
Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +1
Query: 250 PCAPSRKEPTFREWHHWLVGNIQGNEVNSGETLSQYV--GSGPPEKTGLHRYVFLLYKQP 423
P APS P RE+ HWLV +I G +G T Q V P G+HR VF+L++Q
Sbjct: 73 PDAPSPSNPNLREYLHWLVTDIPG---TTGATFGQEVMCYESPRPTMGIHRLVFVLFQQL 129
Query: 424 SKLTFDEP 447
+ T P
Sbjct: 130 GRQTVYAP 137
Score = 33.9 bits (74), Expect = 0.14
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = +2
Query: 77 QVVPDVI-PKAPAALLQVKYPSGVEVKEGNELTPTLVKDEPSVKWDAEPGQ-YYTLAMTD 250
++V DV+ P L V Y + + V G EL P++V +P V + +YTL M D
Sbjct: 14 RIVGDVLDPFVRITNLSVSYGARI-VSNGCELKPSMVTQQPRVVVGGNDMRTFYTLVMVD 72
Query: 251 PVRRPVKNPHFANGTTGWLAT 313
P NP+ WL T
Sbjct: 73 PDAPSPSNPNLRE-YLHWLVT 92
>11_01_0326 -
2435918-2436135,2436232-2436272,2436486-2436547,
2436620-2436820
Length = 173
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +1
Query: 250 PCAPSRKEPTFREWHHWLVGNIQGN-EVNSGETLSQYVGSGPPEKTGLHRYVFLLYKQPS 426
P P +P RE HW+V +I G + + G + Y P G+HR++F+L+KQ
Sbjct: 72 PDVPGPSDPYLREHLHWIVTDIPGTTDASFGREVISY--ESPKPNIGIHRFIFVLFKQKR 129
Query: 427 KLTFDEPRLTNTSSDKR 477
+ T P + + +R
Sbjct: 130 RQTVIVPSFRDHFNTRR 146
>01_01_0831 +
6493897-6494100,6494195-6494256,6498047-6498087,
6498218-6498441
Length = 176
Score = 45.6 bits (103), Expect = 4e-05
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Frame = +1
Query: 250 PCAPSRKEPTFREWHHWLVGNIQGNE-VNSGETLSQYVGSGPPEKTGLHRYVFLLYKQPS 426
P APS +P RE+ HWLV +I V+ G + Y P G+HR VFLL++Q
Sbjct: 73 PDAPSPSDPNLREYLHWLVTDIPATTGVSFGTEVVCY--ESPRPVLGIHRLVFLLFEQLG 130
Query: 427 KLTFDEPRLTNTSSDKRANFKIAEFAKSTT*GIRLRA 537
+ T P R NF +FA+ G+ + A
Sbjct: 131 RQTVYAP-------GWRQNFSTRDFAELYNLGLPVAA 160
Score = 35.5 bits (78), Expect = 0.046
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = +2
Query: 77 QVVPDVI-PKAPAALLQVKYPSGVEVKEGNELTPTLVKDEPSVK-WDAEPGQYYTLAMTD 250
+VV DV+ P L+V Y + EV G EL P+ V D+P V + +YTL M D
Sbjct: 14 RVVGDVVDPFVRRVALRVAYGAR-EVANGCELRPSAVADQPRVAVGGPDMRTFYTLVMVD 72
Query: 251 PVRRPVKNPHFANGTTGWLAT 313
P +P+ WL T
Sbjct: 73 PDAPSPSDPNLRE-YLHWLVT 92
>12_01_0332 -
2564541-2564758,2564847-2564887,2565138-2565199,
2565305-2565505
Length = 173
Score = 44.8 bits (101), Expect = 7e-05
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Frame = +1
Query: 250 PCAPSRKEPTFREWHHWLVGNIQGN-EVNSGETLSQYVGSGPPEKTGLHRYVFLLYKQPS 426
P P +P RE HW+V +I G + + G + Y P G+HR+VF+L+KQ
Sbjct: 72 PDVPGPSDPYLREHLHWIVTDIPGTTDASFGREIISY--ESPKPSIGIHRFVFVLFKQKR 129
Query: 427 KLTFDEPRLTNTSSDKRANFKIAEFAKSTT*GIRLRA 537
+ P R +F +FA+ G+ + A
Sbjct: 130 RQAVVVP-------SSRDHFNTRQFAEENELGLPVAA 159
>04_03_0855 -
20328695-20328912,20329128-20329168,20329782-20329843,
20330023-20330223
Length = 173
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +1
Query: 250 PCAPSRKEPTFREWHHWLVGNIQGN-EVNSGETLSQYVGSGPPEKTGLHRYVFLLYKQPS 426
P P +P RE HW+V +I G + + G + Y P G+HR+V +L+KQ
Sbjct: 72 PDVPGPSDPYLREHLHWIVTDIPGTTDASFGREVVSY--ESPKPNIGIHRFVLVLFKQKR 129
Query: 427 KLTFDEPRLTNTSSDKR 477
+ P + S +R
Sbjct: 130 RQAVTPPSSRDYFSTRR 146
>02_02_0177 +
7484526-7484723,7484913-7484974,7485606-7485646,
7485845-7486101
Length = 185
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +1
Query: 250 PCAPSRKEPTFREWHHWLVGNIQGN-EVNSGETLSQYVGSGPPEKTGLHRYVFLLYKQPS 426
P AP+ PT RE+ HW+V +I + + G + Y P TG+HR V +L++Q
Sbjct: 71 PDAPNPSNPTLREYLHWMVTDIPASTDATYGREVVCY--ESPNPTTGIHRMVLVLFRQLG 128
Query: 427 KLTFDEP 447
+ T P
Sbjct: 129 RETVYAP 135
>01_05_0474 -
22552599-22552687,22553494-22553631,22553766-22554447,
22555120-22555167,22555395-22556042,22556960-22557310,
22558622-22558690
Length = 674
Score = 33.5 bits (73), Expect = 0.18
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = -1
Query: 395 LCRPVFSGGPEPTYWDKVSPEFTSLPWMLPTSQWCHSRNVGSLRDGAQGRSWPECS--TV 222
L + F+ P P +W KVS F SL Q + R G + R + S T
Sbjct: 336 LRKAYFTARPSPNFWKKVSKMF-SLLTETAVRQTSNKRVPGKSAEECLSRVHADLSTPTP 394
Query: 221 LAPRPISLKARLSP 180
+APRP + K + SP
Sbjct: 395 IAPRPRTSKMKFSP 408
>02_02_0730 -
13466806-13466865,13466922-13467029,13467897-13467910,
13468234-13468389,13468474-13468599,13468660-13468842,
13469103-13469198,13469290-13469338
Length = 263
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -3
Query: 570 GRSRHTALRRSCPQSDPLGCTLGE--LGNFEIGTFVARSVSESRLVE 436
G S T+LRRSCP +D + G+ IG F S+++S+L E
Sbjct: 6 GGSTPTSLRRSCPFADINNASAGDSPKKRNNIGVFTPTSLTKSKLQE 52
>11_06_0690 + 26303733-26306540
Length = 935
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +2
Query: 68 EASQVVPDVIPKAPAALLQVKYPSGVEVKEGNELTPTLVKDEPSVKWDAEP 220
EA+ VV +P APA +++ GV EG E K + S A+P
Sbjct: 139 EAAAVVAAAVPPAPAPTREIRAREGVGQAEGKEKEKEKGKGKVSAPSSAQP 189
>05_06_0093 -
25468271-25468320,25468393-25468433,25468592-25468653,
25468872-25469057
Length = 112
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 250 PCAPSRKEPTFREWHHWLVGNI 315
P APS +P+ RE+ HW+V +I
Sbjct: 67 PDAPSPSDPSLREYLHWMVTDI 88
>05_01_0089 +
589457-589506,589598-589741,589820-589903,590118-590261,
590351-590401,590492-590641,591175-591488,592685-592815,
593131-593451,594994-595057,595322-595443
Length = 524
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = +2
Query: 365 LDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTLRATNVPISKLPSSPRVQPRGS 526
LDLR+ + + S+C+N + + ++ + +TN+ + L + RV G+
Sbjct: 117 LDLRRSGSTLNNSSTCSNPANHTERSRKEKYQIPSTNMETNSLKMNDRVSKEGN 170
>07_01_0038 + 305083-305350,305487-305887
Length = 222
Score = 29.5 bits (63), Expect = 3.0
Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Frame = +1
Query: 166 ADSNSGERRAFSEMGRGARTVLHSGHDRPCAPSRKEPTFREWHHWL------VGNIQGNE 327
A S G R A +G A H CA + EP W WL V I E
Sbjct: 34 ACSTGGRRSACLSVGLAAAAATIFQHHPACAATDDEPANNGW--WLTEFPLPVPKIVNKE 91
Query: 328 VNSGETLSQ-YVGSG 369
+N+GET S+ +V +G
Sbjct: 92 LNNGETGSRTFVRNG 106
>01_06_0430 +
29299970-29300031,29300162-29300294,29301057-29301160,
29302201-29302372,29302488-29302628,29302707-29303055,
29303133-29305477
Length = 1101
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = +1
Query: 307 GNIQGNEVNSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSKLTFDEPRLTNTSSDKRANF 486
G + + V S + +G PP +H + + P + +P+ ++ SS+K +NF
Sbjct: 440 GRTETSRVGSQNMPTNSLGQSPPYSPHIHSDEYDMPTDPHRSHSPDPQYSDDSSEKESNF 499
>06_01_0684 + 5008881-5009504
Length = 207
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 418 VCTRGTRICAGLSFPEVQSPRTGTK 344
+C RG + AGL+FPE P T +
Sbjct: 74 ICLRGVQAIAGLNFPESPPPPTAAR 98
>02_02_0590 - 11894721-11895188,11895684-11895851
Length = 211
Score = 29.1 bits (62), Expect = 4.0
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +2
Query: 125 VKYPSGVEVKEGNELTPTLVKDEP 196
++ P ++V+ GN+LTPT V ++P
Sbjct: 71 IQSPINLQVEHGNDLTPTSVSEKP 94
>11_06_0684 -
26264540-26264661,26264926-26264989,26267168-26267371,
26268322-26268456,26269174-26269492,26269581-26269631,
26269721-26269864,26270080-26270160,26270252-26270302,
26270392-26270535,26270750-26270833,26270912-26271055,
26271147-26271196
Length = 530
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +2
Query: 365 LDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTLRATNVPISKLPSSPRVQPRGS 526
LDLR+ + + S+C+N + ++ + +TN+ + L + RV G+
Sbjct: 117 LDLRRSGSTLNNSSTCSNPANHIERSRKEKYQIPSTNMETNSLKMNDRVSKEGN 170
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +2
Query: 365 LDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTLRATNVPISKLPSSPRVQPRGS 526
LDLR+ + + S+C+N + ++ + +TN+ + L + RV G+
Sbjct: 209 LDLRRSGSTLNNSSTCSNPANHIERSRKEKYQIPSTNMETNSLKMNDRVSKEGN 262
>11_06_0460 +
23836034-23836083,23836175-23836318,23836397-23836480,
23836695-23836838,23836928-23836978,23837070-23837150,
23837366-23837509,23837599-23837649,23837738-23838056,
23839994-23840062,23840378-23840698,23841218-23841583,
23842241-23842304,23842569-23842690
Length = 669
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +2
Query: 365 LDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTLRATNVPISKLPSSPRVQPRGS 526
LDLR+ + + S+C+N + ++ + +TN+ + L + RV G+
Sbjct: 117 LDLRRSGSTLNNSSTCSNPANHIERSRKEKYQIPSTNMETNSLKMNDRVSKEGN 170
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +2
Query: 365 LDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTLRATNVPISKLPSSPRVQPRGS 526
LDLR+ + + S+C+N + ++ + +TN+ + L + RV G+
Sbjct: 209 LDLRRSGSTLNNSSTCSNPANHIERSRKEKYQIPSTNMETNSLKMNDRVSKEGN 262
>11_06_0275 -
21818071-21818192,21818457-21818520,21820699-21820902,
21821852-21821986,21822704-21823022,21823111-21823161,
21823251-21823394,21823610-21823690,21823782-21823832,
21823922-21824065,21824280-21824363,21824442-21824585,
21824677-21824726
Length = 530
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +2
Query: 365 LDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTLRATNVPISKLPSSPRVQPRGS 526
LDLR+ + + S+C+N + ++ + +TN+ + L + RV G+
Sbjct: 117 LDLRRSGSTLNNSSTCSNPANHIERSRKEKYQIPSTNMETNSLKMNDRVSKEGN 170
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +2
Query: 365 LDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTLRATNVPISKLPSSPRVQPRGS 526
LDLR+ + + S+C+N + ++ + +TN+ + L + RV G+
Sbjct: 209 LDLRRSGSTLNNSSTCSNPANHIERSRKEKYQIPSTNMETNSLKMNDRVSKEGN 262
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 28.7 bits (61), Expect = 5.2
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +2
Query: 77 QVVPDVIPKAPAALLQVKYPSGVEVKEGNELTPTLVKDEPSVKWDAEPGQYYT--LAMTD 250
Q +P + APA LLQ +P V + +TP + + V A G + +A
Sbjct: 185 QNMPAPMTSAPANLLQTSFPM-AHVGVPSPVTPQVSQPLFPVSTSAGNGAVSSPYVASVA 243
Query: 251 PVRRPVKNPHFANGTTGWLATSRAT 325
P P +P A G+ AT++ T
Sbjct: 244 PGSIPTSSPSVAPAGVGYAATNQGT 268
>03_01_0015 + 126611-126639,126718-127099
Length = 136
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -3
Query: 411 QEEHVSVQACLFRRSRAHVLGQSFAGVYLVALDVANQPVVPFAK 280
Q++ VS C++R AH G+ V DVA+ P +P K
Sbjct: 55 QQQEVSESKCVYRNEVAHAAGERTQ----VLQDVASDPTLPRTK 94
>02_04_0148 - 20198407-20201424
Length = 1005
Score = 28.3 bits (60), Expect = 6.9
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
Frame = +2
Query: 200 VKWDAEP--GQYYTL--------AMTDPVRRPVKNPHFANGT--TGWLATSRATR*TPAK 343
VK+ EP GQY+ + A+ D V NP A T + ++ + T A
Sbjct: 289 VKYVLEPLWGQYHKMKRKLRLAEAVFDMVVECTPNPIAAQATRVARLMPAAKTEQLTAAA 348
Query: 344 LCPSTWALDLRKRQACTDTCSSCTN 418
CP+ A ++ K + C TC++ T+
Sbjct: 349 PCPAAVAAEVEKVRRCVATCNASTS 373
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,665,588
Number of Sequences: 37544
Number of extensions: 509441
Number of successful extensions: 1522
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1515
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -