Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00558
(752 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44437| Best HMM Match : PBP (HMM E-Value=2.5e-05) 46 3e-05
SB_8527| Best HMM Match : zf-C2H2 (HMM E-Value=4.3e-21) 44 1e-04
SB_52449| Best HMM Match : PBP (HMM E-Value=1.1e-05) 33 0.33
SB_40728| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_26695| Best HMM Match : Peptidase_M14 (HMM E-Value=0) 29 3.1
SB_28977| Best HMM Match : AAA (HMM E-Value=0) 29 4.1
SB_47579| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_39227| Best HMM Match : DRMBL (HMM E-Value=0.76) 29 5.4
SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_47305| Best HMM Match : I-set (HMM E-Value=0) 28 7.1
SB_22966| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32) 28 9.4
SB_50564| Best HMM Match : Allexi_40kDa (HMM E-Value=4.3) 28 9.4
SB_19438| Best HMM Match : DEAD (HMM E-Value=7.5e-07) 28 9.4
>SB_44437| Best HMM Match : PBP (HMM E-Value=2.5e-05)
Length = 314
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/46 (43%), Positives = 29/46 (63%)
Frame = +1
Query: 295 HWLVGNIQGNEVNSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSKL 432
H + NIQG+ V++G L +Y+ PP+ TG HRY F L +Q +L
Sbjct: 141 HASLVNIQGSRVSNGTVLCEYLPPIPPQGTGFHRYTFCLLRQEQQL 186
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 104 APAALLQVKYPSGVEVKEGNELTPT 178
+P L ++Y SG +V GN LTP+
Sbjct: 92 SPCVNLDIRYESGAKVHHGNFLTPS 116
>SB_8527| Best HMM Match : zf-C2H2 (HMM E-Value=4.3e-21)
Length = 1049
Score = 44.4 bits (100), Expect = 1e-04
Identities = 21/54 (38%), Positives = 35/54 (64%)
Frame = -3
Query: 435 CELRWLFVQEEHVSVQACLFRRSRAHVLGQSFAGVYLVALDVANQPVVPFAKCG 274
C L L V +++V+++A R +RA+VL S Y+ A D+ ++PVVPF++ G
Sbjct: 332 CNLPLLLVHKKNVTMEASSLRWTRANVLSGSHPLAYITARDIDHKPVVPFSEFG 385
>SB_52449| Best HMM Match : PBP (HMM E-Value=1.1e-05)
Length = 115
Score = 32.7 bits (71), Expect = 0.33
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 15/76 (19%)
Frame = +1
Query: 250 PCAPSRKEPTFREWHHWLVGNIQGNE-------------VNSG--ETLSQYVGSGPPEKT 384
P APS +R W H+L NI +E + SG L Y PP +
Sbjct: 5 PDAPSPIRHQYRSWLHYLKVNIPSDELAQRLDIQSGMDTIQSGMDTELKSYRPPSPPSGS 64
Query: 385 GLHRYVFLLYKQPSKL 432
GLHRY + +Q K+
Sbjct: 65 GLHRYKYYALEQTGKV 80
>SB_40728| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1317
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +2
Query: 431 SHSTSRDSLTLRATNVPISKLPSSPRVQPRGSDCGQLLRSAV*RLRPYSVQ 583
SHS+ +S R N+ ++ PS+ VQ +G+D L++ + L YS Q
Sbjct: 52 SHSSKENSEVYRFENITVNFYPSTKTVQLQGTDKDYLIKKLM-SLLDYSGQ 101
>SB_26695| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
Length = 441
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 244 DRPCAPSRKEPTFREWHHWLVGNIQGNEVNSGETLSQYVG 363
D+P + EP F+ +GN+ GNEV S E L Q +G
Sbjct: 75 DKPGKHEKGEPEFK-----YIGNMHGNEVVSREILLQLIG 109
>SB_28977| Best HMM Match : AAA (HMM E-Value=0)
Length = 442
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 164 ELTPTLVKDEPSVKWDAEPG-QYYTLAMTDPVRRPVKNPH-FANGTTGW 304
+L +V ++P+VKW G + A+ + V P+K PH F T W
Sbjct: 82 QLNSAIVMEKPNVKWSDIAGLESAKEALKEAVILPIKFPHLFTGKRTPW 130
>SB_47579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 316
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = -3
Query: 492 NFEIGTFVARSVSESRLVECELRWLFVQEEHVSVQACLFRRSRAHVLGQSF--AGVYLVA 319
N ++G + + E R +L W + + ++VQ C R+ HVL + A V+L A
Sbjct: 92 NGDLGALIKKHKREKRYTAEDLVWKLLYQLVLAVQECHRRKDGGHVLHRDLKPANVFLDA 151
>SB_39227| Best HMM Match : DRMBL (HMM E-Value=0.76)
Length = 600
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -2
Query: 409 RGTRICAGLSFPEVQSPRTGTKFRRSLPRCPGCCQPASGAIREMW 275
+G + +S EV+SP + ++P PG P+SGA+ +++
Sbjct: 539 QGDHLAGLVSAGEVRSPGCSPEDVLAVPASPGLVPPSSGALTDLY 583
>SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1028
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 206 WDAEPGQYYTLAMTDPVRRPVKNPHFANGTT 298
WD P Y+TL +DPV RP+ + TT
Sbjct: 689 WDPTPKGYFTLPHSDPV-RPIDTSAWVQHTT 718
>SB_47305| Best HMM Match : I-set (HMM E-Value=0)
Length = 5832
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +2
Query: 59 KSFEASQVVPDVIPKAPAALLQVKYPSGVEVKEGNELTPTLVKDEPSVKW 208
+SFE P V +AP+ L+++ + +E + + K +P +KW
Sbjct: 2919 RSFEVDVTAPKVKGEAPSFSLELRPIAAIEEFDSKLICHVSGKPKPQIKW 2968
>SB_22966| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 403 FLLYKQPSKLTFDEPRLTNTSSDKRANFKIAEFAKSTT 516
FL+Y+ P L FD + T D + K+ E K+TT
Sbjct: 50 FLIYEPPQLLNFDHGIVQFTLDDTKMYNKVIEGDKATT 87
>SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32)
Length = 398
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +1
Query: 331 NSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSKLTFDEPRLTNTSSDKRAN 483
NS T SQ V S PP + ++ L K PS+ +F R+ +++ ++ N
Sbjct: 294 NSRFTTSQAVQSPPPLPSSYREFMVQLQKLPSEGSFPPNRVAPSATMQQRN 344
>SB_50564| Best HMM Match : Allexi_40kDa (HMM E-Value=4.3)
Length = 290
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -2
Query: 307 QPASGAIREMWVLYGTAHRVGHGQSVVLSWLRVPFH 200
+P S A E W L H+ H + S+LR P H
Sbjct: 229 RPVSSA--ENWCLISAGHKTKHRNQTIKSYLRHPTH 262
>SB_19438| Best HMM Match : DEAD (HMM E-Value=7.5e-07)
Length = 391
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = -1
Query: 590 ELLVQNRDVVVILRFVEVARNRI 522
ELLV ++DVV++L FV + + ++
Sbjct: 269 ELLVHHKDVVLVLPFVSIVQEKV 291
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,029,427
Number of Sequences: 59808
Number of extensions: 585904
Number of successful extensions: 1803
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1801
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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