Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00558
(752 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g18100.1 68414.m02244 mother of FT and TF1 protein (MFT) iden... 55 6e-08
At5g62040.1 68418.m07787 brother of FT and TFL1 protein (BFT) id... 48 7e-06
At2g27550.1 68415.m03338 centroradialis protein, putative (CEN) ... 44 1e-04
At1g65480.1 68414.m07429 flowering locus T protein (FT) identica... 43 2e-04
At5g03840.1 68418.m00354 terminal flower 1 protein (TFL1) identi... 42 6e-04
At4g20370.1 68417.m02973 twin sister of FT protein (TSF) / TFL1 ... 42 6e-04
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 31 1.1
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 31 1.1
At5g17920.1 68418.m02101 5-methyltetrahydropteroyltriglutamate--... 29 3.3
At4g35985.1 68417.m05121 senescence/dehydration-associated prote... 29 4.4
At2g29125.1 68415.m03540 expressed protein 28 5.8
At1g11950.1 68414.m01381 transcription factor jumonji (jmjC) dom... 28 5.8
At1g08270.1 68414.m00913 expressed protein low similarity to SP|... 28 5.8
>At1g18100.1 68414.m02244 mother of FT and TF1 protein (MFT)
identical to SP|Q9XFK7 MOTHER of FT and TF1 protein
{Arabidopsis thaliana}; contains Pfam profile PF01161:
Phosphatidylethanolamine-binding protein
Length = 173
Score = 54.8 bits (126), Expect = 6e-08
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = +1
Query: 250 PCAPSRKEPTFREWHHWLVGNIQ-GNEVNSGETLSQYVGSGPPEKTGLHRYVFLLYKQPS 426
P APS EP REW HW+V +I G + G+ + Y+ PP G+HRY+ +L++Q S
Sbjct: 70 PDAPSPSEPNMREWVHWIVVDIPGGTNPSRGKEILPYMEPRPP--VGIHRYILVLFRQNS 127
Query: 427 KLTFDEPRLTNTSSDKRANFKIAEFA 504
+ L RANF FA
Sbjct: 128 PV-----GLMVQQPPSRANFSTRMFA 148
Score = 31.5 bits (68), Expect = 0.62
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +2
Query: 77 QVVPDVIPK-APAALLQVKYPSGVEVKEGNELTPTLVKDEPSVKWDAEPGQYYTLAMTDP 253
+V+ DV+ P A + V Y + G E+ P+ + P V + YTL MTDP
Sbjct: 12 RVIGDVLDMFIPTANMSV-YFGPKHITNGCEIKPSTAVNPPKVNISGHSDELYTLVMTDP 70
>At5g62040.1 68418.m07787 brother of FT and TFL1 protein (BFT)
identical to SP|Q9FIT4 BROTHER of FT and TFL1 protein
{Arabidopsis thaliana}; contains Pfam profile PF01161:
Phosphatidylethanolamine-binding protein
Length = 177
Score = 48.0 bits (109), Expect = 7e-06
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +1
Query: 250 PCAPSRKEPTFREWHHWLVGNIQG-NEVNSGETLSQYVGSGPPEKTGLHRYVFLLYKQ 420
P APS P RE+ HW+V +I G + + G + +Y P G+HRYVF L+KQ
Sbjct: 72 PDAPSPSNPYMREYLHWMVTDIPGTTDASFGREIVRY--ETPKPVAGIHRYVFALFKQ 127
Score = 38.3 bits (85), Expect = 0.005
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Frame = +2
Query: 44 MSTVAKSFEASQVVPDVIPKA-PAALLQVKYPSGVEVKEGNELTPTLVKDEPSVKWDAEP 220
MS + +V+ DV+ P+ ++V + S V G+EL P+L+ +P V+ +
Sbjct: 1 MSREIEPLIVGRVIGDVLEMFNPSVTMRVTFNSNTIVSNGHELAPSLLLSKPRVEIGGQD 60
Query: 221 -GQYYTLAMTDPVRRPVKNPHFANGTTGWLAT 313
++TL M DP NP+ W+ T
Sbjct: 61 LRSFFTLIMMDPDAPSPSNPYMRE-YLHWMVT 91
>At2g27550.1 68415.m03338 centroradialis protein, putative (CEN)
strong similarity to SP|Q41261 CENTRORADIALIS protein
{Antirrhinum majus}; contains Pfam profile PF01161:
Phosphatidylethanolamine-binding protein
Length = 175
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +1
Query: 250 PCAPSRKEPTFREWHHWLVGNIQGN-EVNSGETLSQYVGSGPPEKTGLHRYVFLLYKQ 420
P P +P RE HW+V +I G +V+ G+ + Y P G+HR+V+LL+KQ
Sbjct: 73 PDVPGPSDPYLREHLHWIVTDIPGTTDVSFGKEIIGY--EMPRPNIGIHRFVYLLFKQ 128
>At1g65480.1 68414.m07429 flowering locus T protein (FT) identical
to SP|Q9SXZ2 FLOWERING LOCUS T protein {Arabidopsis
thaliana}; contains Pfam profile PF01161:
Phosphatidylethanolamine-binding protein
Length = 175
Score = 43.2 bits (97), Expect = 2e-04
Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
Frame = +1
Query: 250 PCAPSRKEPTFREWHHWLVGNIQGNE-VNSGETLSQYVGSGPPEKTGLHRYVFLLYKQPS 426
P PS P RE+ HWLV +I G + Y P G+HR VF+L++Q
Sbjct: 72 PDVPSPSNPHLREYLHWLVTDIPATTGTTFGNEIVCY--ENPSPTAGIHRVVFILFRQLG 129
Query: 427 KLTFDEPRLTNTSSDKRANFKIAEFAKSTT*GIRLRA 537
+ T P R NF EFA+ G+ + A
Sbjct: 130 RQTVYAP-------GWRQNFNTREFAEIYNLGLPVAA 159
Score = 39.5 bits (88), Expect = 0.002
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +2
Query: 74 SQVVPDVI-PKAPAALLQVKYPSGVEVKEGNELTPTLVKDEPSVKWDAEP-GQYYTLAMT 247
S+VV DV+ P + L+V Y EV G +L P+ V+++P V+ E +YTL M
Sbjct: 12 SRVVGDVLDPFNRSITLKVTYGQR-EVTNGLDLRPSQVQNKPRVEIGGEDLRNFYTLVMV 70
Query: 248 DPVRRPVKNPHFANGTTGWLAT 313
DP NPH WL T
Sbjct: 71 DPDVPSPSNPHLRE-YLHWLVT 91
>At5g03840.1 68418.m00354 terminal flower 1 protein (TFL1) identical
go SP|P93003 TERMINAL FLOWER 1 protein {Arabidopsis
thaliana}; contains Pfam profile PF01161:
Phosphatidylethanolamine-binding protein
Length = 177
Score = 41.5 bits (93), Expect = 6e-04
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 250 PCAPSRKEPTFREWHHWLVGNIQGN-EVNSGETLSQYVGSGPPEKTGLHRYVFLLYKQPS 426
P P +P +E HW+V NI G + G+ + Y P G+HR+VF+L++Q
Sbjct: 75 PDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKEVVSY--ELPRPSIGIHRFVFVLFRQKQ 132
Query: 427 K 429
+
Sbjct: 133 R 133
>At4g20370.1 68417.m02973 twin sister of FT protein (TSF) / TFL1
like protein identical to SP|Q9S7R5 TWIN SISTER of FT
protein (TFL1 like protein) {Arabidopsis thaliana};
contains Pfam profile PF01161:
Phosphatidylethanolamine-binding protein
Length = 175
Score = 41.5 bits (93), Expect = 6e-04
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +1
Query: 250 PCAPSRKEPTFREWHHWLVGNIQGNEVNS-GETLSQYVGSGPPEKTGLHRYVFLLYKQPS 426
P PS P RE+ HWLV +I N+ G + Y PP +G+HR V +L++Q
Sbjct: 72 PDVPSPSNPHQREYLHWLVTDIPATTGNAFGNEVVCYESPRPP--SGIHRIVLVLFRQLG 129
Query: 427 KLTFDEP 447
+ T P
Sbjct: 130 RQTVYAP 136
Score = 33.5 bits (73), Expect = 0.15
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = +2
Query: 80 VVPDVI-PKAPAALLQVKYPSGVEVKEGNELTPTLVKDEPSVKWDAEPGQ-YYTLAMTDP 253
VV DV+ P L+V Y EV G +L P+ V ++P V+ + + +YTL M DP
Sbjct: 14 VVGDVLDPFTRLVSLKVTYGHR-EVTNGLDLRPSQVLNKPIVEIGGDDFRNFYTLVMVDP 72
Query: 254 VRRPVKNPHFANGTTGWLAT 313
NPH WL T
Sbjct: 73 DVPSPSNPH-QREYLHWLVT 91
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Frame = +2
Query: 347 CPSTWALDLRKRQACTDTCSSCTNNHRSSHSTS-RDSLTLRATN--VPISKLPSSPRVQP 517
C W +DL + + C ++ +N H S S RD + L N + KL S V P
Sbjct: 290 CVGVWVVDLSRTEPCMAGDTAQSNGHPEKRSCSGRDPVVLNDNNSKTVLGKLSVSQNVDP 349
Query: 518 RGSDCGQLLRSAV 556
+ L R +V
Sbjct: 350 LLKETKSLGRLSV 362
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Frame = +2
Query: 347 CPSTWALDLRKRQACTDTCSSCTNNHRSSHSTS-RDSLTLRATN--VPISKLPSSPRVQP 517
C W +DL + + C ++ +N H S S RD + L N + KL S V P
Sbjct: 290 CVGVWVVDLSRTEPCMAGDTAQSNGHPEKRSCSGRDPVVLNDNNSKTVLGKLSVSQNVDP 349
Query: 518 RGSDCGQLLRSAV 556
+ L R +V
Sbjct: 350 LLKETKSLGRLSV 362
>At5g17920.1 68418.m02101
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase / vitamin-B12-independent methionine
synthase / cobalamin-independent methionine synthase
(CIMS) identical to SP|O50008
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent
methionine synthase isozyme) (Cobalamin-independent
methionine synthase isozyme) {Arabidopsis thaliana}
Length = 765
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/73 (27%), Positives = 32/73 (43%)
Frame = +2
Query: 29 VLTRAMSTVAKSFEASQVVPDVIPKAPAALLQVKYPSGVEVKEGNELTPTLVKDEPSVKW 208
+L++A V KSFE ++P ++P + ++K ++ P LV D K
Sbjct: 163 LLSKAAKGVDKSFELLSLLPKILPIYKEVITELKAAGATWIQLDE---PVLVMDLEGQKL 219
Query: 209 DAEPGQYYTLAMT 247
A G Y L T
Sbjct: 220 QAFTGAYAELEST 232
>At4g35985.1 68417.m05121 senescence/dehydration-associated
protein-related similar to senescence-associated protein
12 [Hemerocallis hybrid cultivar]
gi|3551958|gb|AAC34857; similar to early-responsive to
dehydration stress ERD7 protein [Arabidopsis thaliana]
gi|15320412|dbj|BAB63916
Length = 448
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +2
Query: 116 LLQVKYPSGVEVKEGNELTPTLVKDEPSVKWDAEPGQYYTLAMTDPVRRPVKNPHFANGT 295
L+Q V + G+E+ L KDEP+VK D E +++L PV+ + H N T
Sbjct: 101 LVQGDITVAVFARVGDEIQWPLTKDEPAVKVD-ESHYFFSLR---PVKESESSDHSVNET 156
>At2g29125.1 68415.m03540 expressed protein
Length = 115
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/61 (29%), Positives = 35/61 (57%)
Frame = +1
Query: 427 KLTFDEPRLTNTSSDKRANFKIAEFAKSTT*GIRLRATSTKRSMTTTSLFCTSSSVLKYA 606
KL+ + +++SS + + + A ST I +R++STK S+ ++S +SSS + +
Sbjct: 6 KLSKKDTTASSSSSKSKFSRSFSTSASSTKSPIFVRSSSTKCSVPSSSSSSSSSSSISRS 65
Query: 607 F 609
F
Sbjct: 66 F 66
>At1g11950.1 68414.m01381 transcription factor jumonji (jmjC)
domain-containing protein contains Pfam domain, PF02373:
jmjC domain; non-consensus TG acceptor splice site at
exon boundary 79262
Length = 880
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -2
Query: 391 AGLSFPEVQSPRTGT-KFRRSLPRCPGCCQPASGAIREMWVLYGTAHRVGHGQSV 230
+ L F E PR+G LP G +P G + +V YGT+ +G G SV
Sbjct: 604 SALPFQEYSDPRSGILNIATKLPE--GLLKPDLGP--KTYVAYGTSDELGRGDSV 654
>At1g08270.1 68414.m00913 expressed protein low similarity to
SP|P46467 SKD1 protein (Vacuolar sorting protein 4b)
{Mus musculus}
Length = 126
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 140 GVEVKEGNELTPTLVKDEPSVKWDAEPG-QYYTLAMTDPVRRPVKNPHFANG 292
G E K L +++++P+VKW G + A+ + V PV P F G
Sbjct: 70 GEESKLRAGLNSAIIREKPNVKWTVVAGLESAKQALKEAVILPVNFPQFFTG 121
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,194,917
Number of Sequences: 28952
Number of extensions: 392106
Number of successful extensions: 1102
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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