Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00555
         (785 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           22   4.8  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   4.8  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   6.4  

>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 747 NQRELMTRAY*EFLVYGDNCKPQSPARRS 661
           N  +L  +   +F+ YG   +P S ARR+
Sbjct: 63  NNSDLRCKRKIQFMPYGPQQQPASVARRN 91


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 427 RYRN*PDKSLHQLRTAMHHH 368
           R RN PD S H LR+    H
Sbjct: 53  RLRNVPDNSFHFLRSLKKVH 72


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 596 TRATLKESACSPWP 637
           TR TLK +  SP+P
Sbjct: 256 TRTTLKNNRASPYP 269


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,096
Number of Sequences: 336
Number of extensions: 4276
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21272645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)