Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00555
         (785 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0774 + 11074508-11074880,11076270-11076370,11076453-110765...    29   4.2  
12_02_0744 - 22704637-22705341                                         29   5.5  
03_02_0881 + 12115757-12115915,12116008-12116135,12117630-121177...    29   5.5  
05_05_0249 - 23603656-23603820,23603938-23604093,23604198-236042...    28   9.7  
02_01_0362 + 2607097-2607371,2607766-2608612,2608842-2608910,260...    28   9.7  

>03_02_0774 +
           11074508-11074880,11076270-11076370,11076453-11076509,
           11076596-11076690,11077480-11077579,11078272-11078330,
           11078874-11079001,11079362-11079440,11079708-11079795,
           11080490-11080590,11080822-11080900,11081740-11081850,
           11082655-11082750,11082885-11083007,11085750-11085947,
           11086071-11086172,11086570-11086634,11086888-11087008,
           11088540-11088697,11088823-11088973,11089414-11089521,
           11089939-11090031,11090285-11090321,11090659-11090906,
           11091396-11091542,11091929-11092099,11092166-11092175,
           11093360-11093505
          Length = 1114

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 257 PPSIPLSFSFATILPPESKIFGFPEAARRAIVVTSA 150
           PP  PL     T++PP +    FP   RR +   SA
Sbjct: 27  PPPRPLLLLPKTLIPPAAAAMEFPRRGRRDVAAASA 62


>12_02_0744 - 22704637-22705341
          Length = 234

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 252 RRAPPGVEPAA*FDSTREISPGPDTGR 332
           RR PP   PA    S+R +SP P +GR
Sbjct: 95  RRRPPRSSPAPTSSSSRGVSPPPTSGR 121


>03_02_0881 +
           12115757-12115915,12116008-12116135,12117630-12117780,
           12117888-12118091,12118583-12119007,12119100-12119292,
           12119439-12119534,12119670-12119825,12119927-12120091
          Length = 558

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +1

Query: 1   RHENSWIVARRPISESICQRCFHQSRTKVRGSKAIRYRPSSNRKYV 138
           R+EN W V +R     +     H+ +  +   K +R  P +N +Y+
Sbjct: 212 RYENDWQVVKRGWDAQVLGEAPHKFQNALEAVKKLREDPKANDQYL 257


>05_05_0249 -
           23603656-23603820,23603938-23604093,23604198-23604293,
           23604376-23604555,23604806-23605234,23605385-23605588,
           23605715-23605865,23606474-23606601,23607083-23607244
          Length = 556

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +1

Query: 1   RHENSWIVARRPISESICQRCFHQSRTKVRGSKAIRYRPSSNRKYV 138
           R+EN W V +R     +     H+ +  V   K +R    +N +Y+
Sbjct: 213 RYENDWDVVKRGWDAQVLGEAPHKFQNAVEAVKTLRSETKANDQYL 258


>02_01_0362 +
           2607097-2607371,2607766-2608612,2608842-2608910,
           2609968-2610202,2610454-2610536,2610924-2611046,
           2611326-2611379
          Length = 561

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 684 PQSPARRSFSGLPGPLGQGEHADSFSVARVRPRTS 580
           PQ P    F GLP  +G  +H D  ++A   P  S
Sbjct: 278 PQKPVENFFKGLPYAVGD-QHGDWIAIAHQHPLLS 311


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,605,550
Number of Sequences: 37544
Number of extensions: 584591
Number of successful extensions: 1447
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1447
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)