Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00555
(785 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g38360.2 68417.m05424 expressed protein contains Pfam profile... 31 0.66
At1g09780.1 68414.m01097 2,3-biphosphoglycerate-independent phos... 31 0.66
At3g08590.2 68416.m00998 2,3-biphosphoglycerate-independent phos... 31 0.87
At3g08590.1 68416.m00997 2,3-biphosphoglycerate-independent phos... 31 0.87
At2g22790.1 68415.m02703 expressed protein ; expression supporte... 31 0.87
At1g67020.1 68414.m07620 hypothetical protein 29 3.5
At2g35170.1 68415.m04314 MORN (Membrane Occupation and Recogniti... 29 4.6
At1g48660.1 68414.m05446 auxin-responsive GH3 family protein sim... 29 4.6
At1g19150.1 68414.m02384 chlorophyll A-B binding protein, putati... 29 4.6
At3g42120.1 68416.m04325 hypothetical protein 28 6.1
At5g56120.1 68418.m07001 expressed protein similar to unknown pr... 28 8.1
At1g20925.1 68414.m02620 auxin efflux carrier family protein con... 28 8.1
>At4g38360.2 68417.m05424 expressed protein contains Pfam profile
PF03619: Domain of unknown function
Length = 485
Score = 31.5 bits (68), Expect = 0.66
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -3
Query: 705 VYGDNCKPQSPARRSFSGLPGPLGQGEHADSFSVARVRPRTSKGIT 568
V D+C SP+RR G+ PL G +DS + R G T
Sbjct: 412 VKDDSCMSSSPSRRVIRGIDDPLLNGSFSDSGVTRTKKHRRKSGYT 457
>At1g09780.1 68414.m01097 2,3-biphosphoglycerate-independent
phosphoglycerate mutase, putative /
phosphoglyceromutase, putative strong similarity to
SP|Q42908 2,3-bisphosphoglycerate-independent
phosphoglycerate mutase (EC 5.4.2.1)
(Phosphoglyceromutase) {Mesembryanthemum crystallinum};
contains Pfam profile PF01676: Metalloenzyme superfamily
Length = 557
Score = 31.5 bits (68), Expect = 0.66
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +1
Query: 1 RHENSWIVARRPISESICQRCFHQSRTKVRGSKAIRYRPSSNRKYV 138
R+EN W V +R + H+ + V K +R P +N +Y+
Sbjct: 212 RYENDWEVVKRGWDAQVLGEAPHKFKNAVEAVKTLRKEPGANDQYL 257
>At3g08590.2 68416.m00998 2,3-biphosphoglycerate-independent
phosphoglycerate mutase, putative /
phosphoglyceromutase, putative strong similarity to
SP|Q42908 2,3-bisphosphoglycerate-independent
phosphoglycerate mutase (EC 5.4.2.1)
(Phosphoglyceromutase) {Mesembryanthemum crystallinum};
contains Pfam profile PF01676: Metalloenzyme superfamily
Length = 560
Score = 31.1 bits (67), Expect = 0.87
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +1
Query: 1 RHENSWIVARRPISESICQRCFHQSRTKVRGSKAIRYRPSSNRKYV 138
R+EN W V +R + H+ ++ + K +R P +N +Y+
Sbjct: 214 RYENDWSVVKRGWDAQVLGEAPHKFKSALEAVKTLRAEPGANDQYL 259
>At3g08590.1 68416.m00997 2,3-biphosphoglycerate-independent
phosphoglycerate mutase, putative /
phosphoglyceromutase, putative strong similarity to
SP|Q42908 2,3-bisphosphoglycerate-independent
phosphoglycerate mutase (EC 5.4.2.1)
(Phosphoglyceromutase) {Mesembryanthemum crystallinum};
contains Pfam profile PF01676: Metalloenzyme superfamily
Length = 560
Score = 31.1 bits (67), Expect = 0.87
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +1
Query: 1 RHENSWIVARRPISESICQRCFHQSRTKVRGSKAIRYRPSSNRKYV 138
R+EN W V +R + H+ ++ + K +R P +N +Y+
Sbjct: 214 RYENDWSVVKRGWDAQVLGEAPHKFKSALEAVKTLRAEPGANDQYL 259
>At2g22790.1 68415.m02703 expressed protein ; expression supported
by MPSS
Length = 325
Score = 31.1 bits (67), Expect = 0.87
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 294 SQIKPQAPLLVVPSVNSFKFQLCNHTPPGVQN 199
S + P +P+ VN FK Q NH PG+ N
Sbjct: 23 SSVNPSSPVYYKTIVNHFKSQTGNHVSPGLTN 54
>At1g67020.1 68414.m07620 hypothetical protein
Length = 659
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +1
Query: 160 TTMARRAASGKPKILDSGGSMVAKLKLKGIDGGHHQEW 273
++M +R A P +LD+ S++ ++++ DG EW
Sbjct: 86 SSMPQRGAGESPILLDNRSSLIRRIEMPVFDGSGVYEW 123
>At2g35170.1 68415.m04314 MORN (Membrane Occupation and Recognition
Nexus) repeat-containing protein
/phosphatidylinositol-4-phosphate 5-kinase-related low
similarity to phosphatidylinositol-4-phosphate 5-kinase
AtPIP5K1 [Arabidopsis thaliana] GI:3702691; contains
Pfam profile PF02493: MORN repeat
Length = 484
Score = 28.7 bits (61), Expect = 4.6
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Frame = +2
Query: 101 RLDTALVLT---VNMSSSDPPT-LLQWLGGQLPGNQRFWTPGGVWLQS*NLKELTEGTTR 268
RL A +LT SSS P T + W G P + T G W+Q ++ EG
Sbjct: 177 RLFVARLLTFIPARFSSSQPSTDRVVWSIGSKPVAENNKTNSGSWVQKYGTNDMYEGEFH 236
Query: 269 SGAC 280
G C
Sbjct: 237 RGKC 240
>At1g48660.1 68414.m05446 auxin-responsive GH3 family protein
similar to auxin-responsive GH3 product [Glycine max]
GI:18591; contains Pfam profile PF03321: GH3
auxin-responsive promoter
Length = 573
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 154 DVTTMARRAASGKPKILDSGGSMVAKLKLKGIDGGHHQ 267
DV R A+G+P + SGG++ ++ G GG H+
Sbjct: 62 DVKPYIERVANGEPSDVISGGTITRFVQSTGTSGGIHK 99
>At1g19150.1 68414.m02384 chlorophyll A-B binding protein, putative
/ LHCI type II, putative very strong similarity to PSI
type II chlorophyll a/b-binding protein Lhca2*1
GI:541565 from [Arabidopsis thaliana]; contains Pfam
profile: PF00504 chlorophyll A-B binding protein
Length = 270
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -3
Query: 267 LVVPSVNSFKFQLCNHTPPGVQNLWFPGSCPP 172
LVV +C PP + LWFPGS PP
Sbjct: 45 LVVVRAGKEVSSVCEPLPPD-RPLWFPGSSPP 75
>At3g42120.1 68416.m04325 hypothetical protein
Length = 409
Score = 28.3 bits (60), Expect = 6.1
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Frame = -3
Query: 378 CTTTH--RIKKELLICQSFRCPGLVIFPVLSQIKPQAPLLVVPSVNSFKFQLCNHTPPGV 205
C H +++ E LI FR PV + P APLL+ P ++ PP
Sbjct: 261 CVDRHPTQVEPEFLIRAGFRVEFTTDTPVTTVTSPTAPLLLDPPPKRLRYSSPPPKPPDF 320
Query: 204 QN--LWFP 187
N L FP
Sbjct: 321 INKSLKFP 328
>At5g56120.1 68418.m07001 expressed protein similar to unknown
protein (dbj|BAA81760.1)
Length = 236
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = -1
Query: 293 VKLSRRLHSWWCPPSIPLSFSFATILPPESKIFGFPEAARRAIVVTSADR*MTYLRLEL 117
VK + WW P ++ L+ S + ++K+F F + R + +R +T LEL
Sbjct: 117 VKSNAVCKKWWIPSAVSLATSLVLVFLVQAKLFVFWKVYRGVNRERNDNRTLTRCVLEL 175
>At1g20925.1 68414.m02620 auxin efflux carrier family protein
contains auxin efflux carrier domain, Pfam:PF03547
Length = 386
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 685 FAIIPINEEFLVSASHKLALITSLPFY 765
+ ++PI F+V +H L L+TS P Y
Sbjct: 303 YLLLPILGVFIVRGAHYLGLVTSEPLY 329
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,367,594
Number of Sequences: 28952
Number of extensions: 412405
Number of successful extensions: 980
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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