Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00554
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    27   2.4  
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    27   4.1  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    27   4.1  
SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   7.2  

>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 123 VSLLQKAKDGVLDLKIATNLLAVRQKRRIYDITNVLEGIGL 245
           V++ QKAK      K A N +  +++R I  ITN++    L
Sbjct: 460 VTIFQKAKHTKHSFKAAYNEIRHKKQRLIKQITNIMHNFNL 500


>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +3

Query: 33  KIYVFCLILAMTDLKYKRYEKSLGLLTTKFVSLLQKAKDGVLDLKIATNLLAVRQK 200
           K Y   L   M  LKY++ EKS  ++ +K +  L +A+   + L+   N ++ + +
Sbjct: 31  KYYQSALDYFMMALKYEKNEKSKEIIRSKVIEYLDRAEKLKVYLQEKNNQISSKSR 86


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 341 VFLIPLPFYQFHFYHNRDLLLSIECYFYFF 252
           + L+PL F  F F     LL ++  YF  F
Sbjct: 485 ILLVPLQFISFRFNRRLSLLFAVLTYFSTF 514


>SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = -2

Query: 325 YLFTNFIFIIIGTCSSPLNAIFTSFSIKPIPSKTLVISYILRFCLTANKL 176
           +++T    + +G+ ++   A  ++ S+ P P  TLV+SY    C T+  L
Sbjct: 4   FVWTLLGALSLGSLTTAYGANASNSSV-PTPDNTLVVSYTNTSCYTSGPL 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,026,901
Number of Sequences: 5004
Number of extensions: 58483
Number of successful extensions: 145
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)