Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00554
(803 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g22220.2 68418.m02588 E2F transcription factor-1 (E2F1) ident... 84 1e-16
At5g22220.1 68418.m02587 E2F transcription factor-1 (E2F1) ident... 84 1e-16
At1g47870.1 68414.m05327 E2F transcription factor-2 (E2F2) / tra... 82 4e-16
At2g36010.3 68415.m04422 E2F transcription factor-3 (E2F3) ident... 82 5e-16
At2g36010.1 68415.m04420 E2F transcription factor-3 (E2F3) ident... 82 5e-16
At2g36010.2 68415.m04421 E2F transcription factor-3 (E2F3) ident... 71 1e-12
At3g48160.2 68416.m05253 transcription factor, putative / E2F-li... 53 2e-07
At3g48160.1 68416.m05252 transcription factor, putative / E2F-li... 53 2e-07
At5g14960.1 68418.m01755 transcription factor, putative / E2F-li... 51 8e-07
At3g01330.1 68416.m00049 transcription factor, putative / E2F-li... 51 1e-06
At1g18485.1 68414.m02307 pentatricopeptide (PPR) repeat-containi... 28 6.3
At5g01550.1 68418.m00070 lectin protein kinase, putative similar... 28 8.3
>At5g22220.2 68418.m02588 E2F transcription factor-1 (E2F1)
identical to E2F transcription factor-1 E2F1
[Arabidopsis thaliana] gi|10443849|gb|AAG17608
Length = 469
Score = 83.8 bits (198), Expect = 1e-16
Identities = 41/60 (68%), Positives = 51/60 (85%)
Frame = +3
Query: 84 RYEKSLGLLTTKFVSLLQKAKDGVLDLKIATNLLAVRQKRRIYDITNVLEGIGLIEKEVK 263
RY+ SLGLLT KF++L+++A+DG+LDL A + L V QKRRIYDITNVLEGIGLIEK +K
Sbjct: 129 RYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEV-QKRRIYDITNVLEGIGLIEKTLK 187
>At5g22220.1 68418.m02587 E2F transcription factor-1 (E2F1)
identical to E2F transcription factor-1 E2F1
[Arabidopsis thaliana] gi|10443849|gb|AAG17608
Length = 469
Score = 83.8 bits (198), Expect = 1e-16
Identities = 41/60 (68%), Positives = 51/60 (85%)
Frame = +3
Query: 84 RYEKSLGLLTTKFVSLLQKAKDGVLDLKIATNLLAVRQKRRIYDITNVLEGIGLIEKEVK 263
RY+ SLGLLT KF++L+++A+DG+LDL A + L V QKRRIYDITNVLEGIGLIEK +K
Sbjct: 129 RYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEV-QKRRIYDITNVLEGIGLIEKTLK 187
>At1g47870.1 68414.m05327 E2F transcription factor-2 (E2F2) /
transcription factor E2Fc (E2Fc) identical to
transcription factor E2Fc [Arabidopsis thaliana]
GI:19578311; contains Pfam profile PF02319:
Transcription factor E2F/dimerisation partner; identical
to cDNA E2F transcription factor-2 E2F2 GI:10443850
Length = 396
Score = 82.2 bits (194), Expect = 4e-16
Identities = 42/60 (70%), Positives = 47/60 (78%)
Frame = +3
Query: 84 RYEKSLGLLTTKFVSLLQKAKDGVLDLKIATNLLAVRQKRRIYDITNVLEGIGLIEKEVK 263
RY+ SLGLLT KFV L+Q+A+DG LDL +L V QKRRIYDITNVLEGIGLIEK K
Sbjct: 155 RYDSSLGLLTKKFVKLIQEAEDGTLDLNYCAVVLEV-QKRRIYDITNVLEGIGLIEKTTK 213
>At2g36010.3 68415.m04422 E2F transcription factor-3 (E2F3)
identical to E2F transcription factor-3 E2F3
[Arabidopsis thaliana] gi|10443853|gb|AAG17610
Length = 485
Score = 81.8 bits (193), Expect = 5e-16
Identities = 45/72 (62%), Positives = 53/72 (73%), Gaps = 2/72 (2%)
Frame = +3
Query: 84 RYEKSLGLLTTKFVSLLQKAKDGVLDLKIATNLLAVRQKRRIYDITNVLEGIGLIEKEVK 263
RY+ SLGLLT KFV+L+++AKDG+LDL A L V QKRRIYDITNVLEGI LIEK K
Sbjct: 167 RYDSSLGLLTKKFVNLIKQAKDGMLDLNKAAETLEV-QKRRIYDITNVLEGIDLIEKPFK 225
Query: 264 --IAFNGEEQVP 293
I + G + P
Sbjct: 226 NRILWKGVDACP 237
>At2g36010.1 68415.m04420 E2F transcription factor-3 (E2F3)
identical to E2F transcription factor-3 E2F3
[Arabidopsis thaliana] gi|10443853|gb|AAG17610
Length = 483
Score = 81.8 bits (193), Expect = 5e-16
Identities = 45/72 (62%), Positives = 53/72 (73%), Gaps = 2/72 (2%)
Frame = +3
Query: 84 RYEKSLGLLTTKFVSLLQKAKDGVLDLKIATNLLAVRQKRRIYDITNVLEGIGLIEKEVK 263
RY+ SLGLLT KFV+L+++AKDG+LDL A L V QKRRIYDITNVLEGI LIEK K
Sbjct: 167 RYDSSLGLLTKKFVNLIKQAKDGMLDLNKAAETLEV-QKRRIYDITNVLEGIDLIEKPFK 225
Query: 264 --IAFNGEEQVP 293
I + G + P
Sbjct: 226 NRILWKGVDACP 237
>At2g36010.2 68415.m04421 E2F transcription factor-3 (E2F3)
identical to E2F transcription factor-3 E2F3
[Arabidopsis thaliana] gi|10443853|gb|AAG17610
Length = 514
Score = 70.5 bits (165), Expect = 1e-12
Identities = 40/65 (61%), Positives = 47/65 (72%), Gaps = 2/65 (3%)
Frame = +3
Query: 105 LLTTKFVSLLQKAKDGVLDLKIATNLLAVRQKRRIYDITNVLEGIGLIEKEVK--IAFNG 278
LLT KFV+L+++AKDG+LDL A L V QKRRIYDITNVLEGI LIEK K I + G
Sbjct: 220 LLTKKFVNLIKQAKDGMLDLNKAAETLEV-QKRRIYDITNVLEGIDLIEKPFKNRILWKG 278
Query: 279 EEQVP 293
+ P
Sbjct: 279 VDACP 283
>At3g48160.2 68416.m05253 transcription factor, putative / E2F-like
repressor E2L3 (E2L3) identical to E2F-like repressor
E2L3 [Arabidopsis thaliana] GI:20502508
Length = 403
Score = 53.2 bits (122), Expect = 2e-07
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Frame = +3
Query: 78 YKRYEKSLGLLTTKFVSLLQKAKDGVLDLKIATNLLAVRQKRRIYDITNVLEGIGLIEKE 257
Y R +KSLGLL T F++L + ++ L A + L V ++RRIYDI NVLE +G++ +
Sbjct: 32 YSRKQKSLGLLCTNFLALYNREGIEMVGLDDAASKLGV-ERRRIYDIVNVLESVGVLTRR 90
Query: 258 VK--IAFNGEEQVPIMIK 305
K + G +P +K
Sbjct: 91 AKNQYTWKGFSAIPGALK 108
Score = 38.3 bits (85), Expect = 0.006
Identities = 29/67 (43%), Positives = 37/67 (55%), Gaps = 10/67 (14%)
Frame = +3
Query: 84 RYEKSLGLLTTKFVSLLQKAKD-GVLDLKIATNLLA--------VRQK-RRIYDITNVLE 233
R EKSLGLLT F+ L ++ ++ L A LL +R K RR+YDI NVL
Sbjct: 169 RREKSLGLLTQNFIKLFICSEAIRIISLDDAAKLLLGDAHNTSIMRTKVRRLYDIANVLS 228
Query: 234 GIGLIEK 254
+ LIEK
Sbjct: 229 SMNLIEK 235
>At3g48160.1 68416.m05252 transcription factor, putative / E2F-like
repressor E2L3 (E2L3) identical to E2F-like repressor
E2L3 [Arabidopsis thaliana] GI:20502508
Length = 379
Score = 53.2 bits (122), Expect = 2e-07
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Frame = +3
Query: 78 YKRYEKSLGLLTTKFVSLLQKAKDGVLDLKIATNLLAVRQKRRIYDITNVLEGIGLIEKE 257
Y R +KSLGLL T F++L + ++ L A + L V ++RRIYDI NVLE +G++ +
Sbjct: 32 YSRKQKSLGLLCTNFLALYNREGIEMVGLDDAASKLGV-ERRRIYDIVNVLESVGVLTRR 90
Query: 258 VK--IAFNGEEQVPIMIK 305
K + G +P +K
Sbjct: 91 AKNQYTWKGFSAIPGALK 108
Score = 38.3 bits (85), Expect = 0.006
Identities = 29/67 (43%), Positives = 37/67 (55%), Gaps = 10/67 (14%)
Frame = +3
Query: 84 RYEKSLGLLTTKFVSLLQKAKD-GVLDLKIATNLLA--------VRQK-RRIYDITNVLE 233
R EKSLGLLT F+ L ++ ++ L A LL +R K RR+YDI NVL
Sbjct: 169 RREKSLGLLTQNFIKLFICSEAIRIISLDDAAKLLLGDAHNTSIMRTKVRRLYDIANVLS 228
Query: 234 GIGLIEK 254
+ LIEK
Sbjct: 229 SMNLIEK 235
>At5g14960.1 68418.m01755 transcription factor, putative / E2F-like
repressor E2L1 (E2L1) identical to E2F-like repressor
E2L1 GI:20502504 from [Arabidopsis thaliana]
Length = 359
Score = 51.2 bits (117), Expect = 8e-07
Identities = 27/69 (39%), Positives = 40/69 (57%)
Frame = +3
Query: 57 LAMTDLKYKRYEKSLGLLTTKFVSLLQKAKDGVLDLKIATNLLAVRQKRRIYDITNVLEG 236
LA+ Y R +KSLG+L F++L + + L A L V ++RRIYD+ N+LE
Sbjct: 4 LALAPQVYSRKDKSLGVLVANFLTLYNRPDVDLFGLDDAAAKLGV-ERRRIYDVVNILES 62
Query: 237 IGLIEKEVK 263
IGL+ + K
Sbjct: 63 IGLVARSGK 71
Score = 35.1 bits (77), Expect = 0.055
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Frame = +3
Query: 84 RYEKSLGLLTTKFVSLLQKAKDGVLDLKIATNLLA-------VRQK-RRIYDITNVLEGI 239
R E++L LL FV L + D ++ AT L +R+K RR+YDI NV +
Sbjct: 138 RKERTLWLLAQNFVKLFLCSDDDLVTFDSATKALLNESQDMNMRKKVRRLYDIANVFSSM 197
Query: 240 GLIEK 254
LIEK
Sbjct: 198 KLIEK 202
>At3g01330.1 68416.m00049 transcription factor, putative / E2F-like
repressor E2L2 (E2L2) identical to E2F-like repressor
E2L2 [Arabidopsis thaliana] GI:20502506
Length = 354
Score = 50.8 bits (116), Expect = 1e-06
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Frame = +3
Query: 78 YKRYEKSLGLLTTKFVSLLQKAKDGVLDLKIATNLLAVRQKRRIYDITNVLEGIGLIEKE 257
Y R EKSLG+L + F+ L + ++ L A L V ++RRIYD+ N+LE IG++ +
Sbjct: 19 YSRKEKSLGVLVSNFLRLYNRDDVDLIGLDDAAGQLGV-ERRRIYDVVNILESIGIVARR 77
Query: 258 VK--IAFNGEEQVP 293
K ++ G ++P
Sbjct: 78 GKNQYSWKGFGEIP 91
Score = 34.7 bits (76), Expect = 0.073
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Frame = +3
Query: 81 KRYEKSLGLLTTKFVSLLQKAKDGVLDLKIATNLLA--------VRQK-RRIYDITNVLE 233
++ EKSL LL FV + + D ++ L A L +R K RR+YDI NV
Sbjct: 144 QKKEKSLWLLAQNFVKMFLCSDDDLITLDSAAKALLSDSPDSVHMRTKVRRLYDIANVFA 203
Query: 234 GIGLIEK 254
+ LIEK
Sbjct: 204 SMNLIEK 210
>At1g18485.1 68414.m02307 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 970
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 242 FD*KRSKNSIQWRGAGPDYDKNEIGKKVM 328
FD RSKN QW Y +NE+ +V+
Sbjct: 143 FDALRSKNLFQWNAVISSYSRNELYDEVL 171
>At5g01550.1 68418.m00070 lectin protein kinase, putative similar to
receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733; contains protein kinase domain,
Pfam:PF00069; contains legume lectins alpha and beta
domains, Pfam:PF00138 and Pfam:PF00139
Length = 688
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -2
Query: 316 TNFIFIIIGTCSSPLNAIFTSFSIKPIPSKT 224
T+F+F+II T SS FT F++ P P +T
Sbjct: 90 TSFVFVIIPTSSSNGGFGFT-FTLSPTPDRT 119
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,158,071
Number of Sequences: 28952
Number of extensions: 281575
Number of successful extensions: 723
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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