Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00553
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   136   4e-33
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   132   6e-32
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    29   0.58 
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.4  
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    26   5.4  
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    26   7.1  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  136 bits (328), Expect = 4e-33
 Identities = 68/100 (68%), Positives = 77/100 (77%)
 Frame = +1

Query: 256 ENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPA 435
           ENPADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL+IV DP 
Sbjct: 72  ENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPR 131

Query: 436 QDHQPITEASYVNIPVIALCNTDSH*DLWTLLSHATPSLP 555
            D Q I EAS+VNIPVIALC+TDS      +L+H   ++P
Sbjct: 132 ADAQAIKEASFVNIPVIALCDTDS------ILNHVDVAIP 165



 Score = 85.8 bits (203), Expect = 6e-18
 Identities = 38/63 (60%), Positives = 48/63 (76%)
 Frame = +3

Query: 510 LRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVELFFYRDPEESEKD 689
           L  VD+AIP N K   SIGL W+LLAREVLRLRG + R   W+V+ +L+FYRDPEE E++
Sbjct: 157 LNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRDPEEIERE 216

Query: 690 EQQ 698
           E+Q
Sbjct: 217 EEQ 219



 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 26/51 (50%), Positives = 40/51 (78%)
 Frame = +2

Query: 71  VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEK 223
           VL   ++D+  +LAA +H+G++N+  +ME YV+KRR+DG H+INL +TWEK
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEK 60


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  132 bits (319), Expect = 6e-32
 Identities = 65/101 (64%), Positives = 77/101 (76%)
 Frame = +1

Query: 256 ENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPA 435
           ENPADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL++V DP 
Sbjct: 71  ENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPR 130

Query: 436 QDHQPITEASYVNIPVIALCNTDSH*DLWTLLSHATPSLPT 558
            D Q I EAS+VNIPVIALC+TDS      +L+H   ++PT
Sbjct: 131 ADAQAIKEASFVNIPVIALCDTDS------ILNHVDIAIPT 165



 Score = 89.0 bits (211), Expect = 7e-19
 Identities = 40/65 (61%), Positives = 49/65 (75%)
 Frame = +3

Query: 510 LRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVELFFYRDPEESEKD 689
           L  VDIAIP N K   SIGL+W+LLAREVLR+RG L R   WDV+ +L+FYRDPEE E++
Sbjct: 156 LNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYRDPEEVERE 215

Query: 690 EQQAK 704
           E+  K
Sbjct: 216 EEAKK 220



 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 25/55 (45%), Positives = 42/55 (76%)
 Frame = +2

Query: 59  GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEK 223
           G  ++L   +ED+ ++LAA  H+G++N+  +M+ YV+KRR+DG H++NL +TWEK
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEK 59


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +1

Query: 406 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDS 507
           P L+++L+P ++     EA   ++P I + +TD+
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDA 213


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 561 IGLMWWLLAREVLRLRGVLPRDQRWD 638
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 474 HSCDCFVQHRLPLRFVDIAIPCNT 545
           HS D + Q+ +P R +++A  C T
Sbjct: 176 HSKDDYAQYMIPFRDINVATSCRT 199


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = -3

Query: 456 SNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRRSTGVRGKLQYSTLTEGP 289
           S GL  L R +   E  F +     +S + W  T +   + G+RG   ++   EGP
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,470,084
Number of Sequences: 5004
Number of extensions: 75052
Number of successful extensions: 178
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)