Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00553
         (791 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...   124   7e-29
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...   121   5e-28
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...   121   5e-28
At2g22340.1 68415.m02651 hypothetical protein                          33   0.29 
At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   2.0  
At3g54570.1 68416.m06038 calmodulin-binding protein-related cont...    29   4.7  
At3g45620.1 68416.m04927 transducin family protein / WD-40 repea...    28   8.2  
At3g16160.1 68416.m02040 tesmin/TSO1-like CXC domain-containing ...    28   8.2  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score =  124 bits (299), Expect = 7e-29
 Identities = 56/84 (66%), Positives = 66/84 (78%)
 Frame = +1

Query: 256 ENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPA 435
           ENP D+ V S+RP+GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP 
Sbjct: 73  ENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDPR 132

Query: 436 QDHQPITEASYVNIPVIALCNTDS 507
            DHQPI E +  NIP+IA C+TDS
Sbjct: 133 TDHQPIKEGALGNIPIIAFCDTDS 156



 Score = 92.7 bits (220), Expect = 3e-19
 Identities = 40/69 (57%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
 Frame = +3

Query: 507 PLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVELFFYRDPEESE- 683
           P+RFVDI IP N K  HSIG ++WLLAR VL++RG +   Q+WDV+V+LFFYR+PEE++ 
Sbjct: 157 PMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIAAGQKWDVMVDLFFYREPEETKP 216

Query: 684 KDEQQAKEQ 710
           +DE +A  Q
Sbjct: 217 EDEDEAGPQ 225



 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 28/50 (56%), Positives = 35/50 (70%)
 Frame = +2

Query: 74  LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEK 223
           L+  E DV  M AA  HLG +N N+QME YV+KRR DG ++ NL +TWEK
Sbjct: 12  LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEK 61


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score =  121 bits (292), Expect = 5e-28
 Identities = 55/84 (65%), Positives = 64/84 (76%)
 Frame = +1

Query: 256 ENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPA 435
           ENP D+ V S+RP+GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP 
Sbjct: 74  ENPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPR 133

Query: 436 QDHQPITEASYVNIPVIALCNTDS 507
            DHQPI E +  NIP IA C+TDS
Sbjct: 134 TDHQPIKEGALGNIPTIAFCDTDS 157



 Score = 87.4 bits (207), Expect = 1e-17
 Identities = 36/67 (53%), Positives = 51/67 (76%)
 Frame = +3

Query: 507 PLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVELFFYRDPEESEK 686
           P+ FVDI IP N K  HSIG ++WLLAR VL++RG +   Q+WDV+V+LFFYR+PEE+++
Sbjct: 158 PMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILAAQKWDVMVDLFFYREPEEAKQ 217

Query: 687 DEQQAKE 707
           +  +  E
Sbjct: 218 EGDEEAE 224



 Score = 64.9 bits (151), Expect = 6e-11
 Identities = 26/46 (56%), Positives = 35/46 (76%)
 Frame = +2

Query: 86  EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEK 223
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW+K
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDK 62


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score =  121 bits (292), Expect = 5e-28
 Identities = 55/84 (65%), Positives = 64/84 (76%)
 Frame = +1

Query: 256 ENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPA 435
           ENP D+ V S+RP+GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP 
Sbjct: 74  ENPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPR 133

Query: 436 QDHQPITEASYVNIPVIALCNTDS 507
            DHQPI E +  NIP IA C+TDS
Sbjct: 134 TDHQPIKEGALGNIPTIAFCDTDS 157



 Score = 64.9 bits (151), Expect = 6e-11
 Identities = 26/46 (56%), Positives = 35/46 (76%)
 Frame = +2

Query: 86  EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEK 223
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW+K
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDK 62



 Score = 64.5 bits (150), Expect = 8e-11
 Identities = 27/47 (57%), Positives = 35/47 (74%)
 Frame = +3

Query: 507 PLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVV 647
           P+ FVDI IP N K  HSIG ++WLLAR VL++RG +   Q+WDV+V
Sbjct: 158 PMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILAAQKWDVMV 204


>At2g22340.1 68415.m02651 hypothetical protein
          Length = 358

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 124 SWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC 243
           SW     LP+GD  +Q  C WY   +  S +G+  +   C
Sbjct: 188 SWTEASLLPEGDCFIQLNCLWYKPKEDTSVMGRKMASSDC 227


>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 361 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 462
           TP   TNQ++ A  E     +LDP     PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653


>At3g54570.1 68416.m06038 calmodulin-binding protein-related
           contains similarity to potato calmodulin-binding protein
           PCBP GI:17933110 from [Solanum tuberosum]
          Length = 417

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 560 RVGRLGVAWDSNVHKS*WESVL 495
           R GR+G  WD+NVH++   S+L
Sbjct: 107 RSGRIGRCWDANVHRATCSSLL 128


>At3g45620.1 68416.m04927 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats;  similar to
           PC326 protein  (GI:200241) (PIR2:S37694) [Mus
           musculus];Human (H326) translated mRNA - Homo sapiens,
           EMBL:HS06631
          Length = 481

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 463 SYVNIPVIALCNTDSH*DLWTLLSHATPSLP 555
           S+ +IP++A C  +    LWT +S+   SLP
Sbjct: 371 SHPHIPLLASCGIEKSVKLWTPMSNDVLSLP 401


>At3g16160.1 68416.m02040 tesmin/TSO1-like CXC domain-containing
           protein low similarity to cysteine-rich polycomb-like
           protein (cpp1) [Glycine max] GI:4218187; contains Pfam
           profile PF03638: Tesmin/TSO1-like CXC domain
          Length = 360

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +1

Query: 154 GDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHEN 261
           G  C Q+ C    CD  AS  G  C+ C C   H N
Sbjct: 68  GCRCKQSKCLKLYCDCFAS--GVVCTDCDCVDCHNN 101


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,719,426
Number of Sequences: 28952
Number of extensions: 421040
Number of successful extensions: 1021
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)